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contig_metadata

26 rows where bioproject = "PRJNA235310", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 26 ✖

tax_phylum 1

  • Myxococcota · 26 ✖

tax_kingdom 1

bioproject 1

  • PRJNA235310 · 26 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9295433 9295433 PRJNA235310_P_NODE_3228_length_211_cov_1.283951_g3202_i0 PRJNA235310 3228 211 1.283951 2.70913661 Pseudomonadati 3379134 Bacteria Bacteria 101 4.7e-24   NR HEX2876345.1 2268199 g3202 i0 67.1 3.98104265402844 70 23 99.5 0 1 210 89 158 HEX2876345.1 dienelactone hydrolase family protein [Polyangiaceae bacterium] diamond 840 102 0.990196078431373 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
19493283 19493283 PRJNA235310_P_NODE_1336_length_349_cov_1.636667_g1310_i0 PRJNA235310 1336 349 1.636667 5.71196783 Myxococcota bacterium 2818507 Bacteria Bacteria 188 5.08e-56   NR MED5372591.1 2818507 g1310 i0 82.9 7.62464183381089 111 19 95.4 0 3 335 282 392 MED5372591.1 thiolase family protein [Myxococcota bacterium] diamond 2661 188 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
23319466 23319466 PRJNA235310_P_NODE_879_length_424_cov_0.968000_g853_i0 PRJNA235310 879 424 0.968 4.10432 Myxococcota bacterium 2818507 Bacteria Bacteria 178 1.97e-50   NR MFT6144364.1 2818507 g853 i0 63.1 14.561320754717 141 52 99.8 0 424 2 344 484 MFT6144364.1 4-coumarate--CoA ligase [Myxococcota bacterium] diamond 6174 178 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
26630858 26630858 PRJNA235310_P_NODE_3781_length_194_cov_1.434483_g3755_i0 PRJNA235310 3781 194 1.434483 2.78289702 Myxococcota bacterium 2818507 Bacteria Bacteria 60.1 1.51e-8   NR MDP7040769.1 2818507 g3755 i0 64.3 0.649484536082474 42 14 64.9 1 163 38 1484 1524 MDP7040769.1 hypothetical protein [Myxococcota bacterium] diamond 126 60.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27232005 27232005 PRJNA235310_P_NODE_3_length_2445_cov_4.610184_g2_i0 PRJNA235310 3 2445 4.610184 112.7189988 Polyangiaceae bacterium 2268199 Bacteria Bacteria 121 5.39e-25   NR HTV24288.1 2268199 g2 i0 42.1 0.311656441717791 254 122 29 11 1956 1249 160 406 HTV24288.1 hypothetical protein [Polyangiaceae bacterium] diamond 762 121 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28716261 28716261 PRJNA235310_P_NODE_3627_length_198_cov_1.395973_g3601_i0 PRJNA235310 3627 198 1.395973 2.76402654 Kofleriaceae bacterium 2212474 Bacteria Bacteria 51.2 2e-5   NR HWO23783.1 2212474 g3601 i0 47.8 0.696969696969697 46 24 69.7 0 182 45 211 256 HWO23783.1 plastocyanin/azurin family copper-binding protein [Kofleriaceae bacterium] diamond 138 51.2 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28796881 28796881 PRJNA235310_P_NODE_5227_length_167_cov_1.762712_g5201_i0 PRJNA235310 5227 167 1.762712 2.94372904 Pseudomonadati 3379134 Bacteria Bacteria 82.4 1.04e-16   NR MBM4362244.1 2026735 g5201 i0 65.5 3.89820359281437 55 19 98.8 0 167 3 272 326 MBM4362244.1 lipid-transfer protein [Deltaproteobacteria bacterium] diamond 651 83.2 0.990384615384615 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28842321 28842321 PRJNA235310_P_NODE_3528_length_201_cov_1.026316_g3502_i0 PRJNA235310 3528 201 1.026316 2.06289516 Myxococcota bacterium 2818507 Bacteria Bacteria 42 0.0401   NR MEZ4265313.1 2818507 g3502 i0 44.9 0.73134328358209 49 26 73.1 1 24 170 402 449 MEZ4265313.1 hypothetical protein [Myxococcota bacterium] diamond 147 42 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28905382 28905382 PRJNA235310_P_NODE_6268_length_162_cov_1.274336_g6242_i0 PRJNA235310 6268 162 1.274336 2.06442432 Labilithrix luteola 1391654 Bacteria Bacteria 59.3 8.02e-9   NR WP_146655144.1 1391654 g6242 i0 66.7 3.61111111111111 39 13 72.2 0 118 2 90 128 WP_146655144.1 peptide-methionine (S)-S-oxide reductase MsrA [Labilithrix luteola] diamond 585 59.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
28937293 28937293 PRJNA235310_P_NODE_2268_length_257_cov_1.750000_g2242_i0 PRJNA235310 2268 257 1.75 4.4975 Nannocystaceae bacterium 2545255 Bacteria Bacteria 72 2.1e-12   NR MEZ4381494.1 2545255 g2242 i0 39.5 1.00389105058366 86 49 96.9 1 1 249 251 336 MEZ4381494.1 hypothetical protein [Nannocystaceae bacterium] diamond 258 72 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
28937294 28937294 PRJNA235310_P_NODE_3388_length_206_cov_0.987261_g3362_i0 PRJNA235310 3388 206 0.987261 2.03375766 Myxococcales bacterium 2026763 Bacteria Bacteria 48.9 1.55e-4   NR MBT9558510.1 2026763 g3362 i0 49 0.742718446601942 51 24 71.4 2 59 205 755 805 MBT9558510.1 hypothetical protein [Myxococcales bacterium] diamond 153 48.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29410684 29410684 PRJNA235310_P_NODE_169_length_763_cov_3.023810_g151_i0 PRJNA235310 169 763 3.02381 23.0716703 Myxococcota bacterium 2818507 Bacteria Bacteria 78.6 1.75e-12   NR HUT99814.1 2818507 g151 i0 38.6 0.519003931847969 132 72 49.1 7 95 469 375 504 HUT99814.1 Ig domain-containing protein [Myxococcota bacterium] diamond 396 78.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29428306 29428306 PRJNA235310_P_NODE_5649_length_165_cov_2.060345_g5623_i0 PRJNA235310 5649 165 2.060345 3.39956925 Bacteria 2 Bacteria Bacteria 63.2 7.95e-10   NR MBT6489693.1 2026735 g5623 i0 48.3 4.29090909090909 58 25 96.4 2 5 163 1544 1601 MBT6489693.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 708 63.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29789545 29789545 PRJNA235310_P_NODE_5831_length_165_cov_0.896552_g5805_i0 PRJNA235310 5831 165 0.896552 1.4793108 Kofleriaceae bacterium 2212474 Bacteria Bacteria 52.4 1.15e-6   NR HTR55435.1 2212474 g5805 i0 51.4 1.34545454545455 37 18 67.3 0 15 125 39 75 HTR55435.1 hypothetical protein [Kofleriaceae bacterium] diamond 222 52.4 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30231957 30231957 PRJNA235310_P_NODE_1212_length_366_cov_0.949527_g1186_i0 PRJNA235310 1212 366 0.949527 3.47526882 Polyangia bacterium 3058050 Bacteria Bacteria 55.5 5.28e-6   NR MDY0000024.1 3058050 g1186 i0 40.6 1.28688524590164 69 35 54.1 2 3 200 404 469 MDY0000024.1 hypothetical protein [Polyangia bacterium] diamond 471 55.5 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
30453392 30453392 PRJNA235310_P_NODE_1133_length_377_cov_1.896341_g1107_i0 PRJNA235310 1133 377 1.896341 7.14920557 Myxococcota bacterium 2818507 Bacteria Bacteria 50.4 1.04e-4   NR MEO0460890.1 2818507 g1107 i0 50 0.716180371352785 44 22 35 0 344 213 8 51 MEO0460890.1 hypothetical protein [Myxococcota bacterium] diamond 270 50.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30737365 30737365 PRJNA235310_P_NODE_1954_length_283_cov_1.111111_g1928_i0 PRJNA235310 1954 283 1.111111 3.14444413 Archangium violaceum 83451 Bacteria Bacteria 50.4 1.13e-4   NR WP_043406812.1 83451 g1928 i0 36.3 0.964664310954064 91 53 96.5 3 279 7 240 325 WP_043406812.1 hypothetical protein [Archangium violaceum] diamond 273 50.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
30737372 30737372 PRJNA235310_P_NODE_5974_length_164_cov_0.904348_g5948_i0 PRJNA235310 5974 164 0.904348 1.48313072 Myxococcota bacterium 2818507 Bacteria Bacteria 47.4 3e-4   NR MEM6292225.1 2818507 g5948 i0 51.1 0.859756097560976 47 21 82.3 1 29 163 404 450 MEM6292225.1 ATP-binding protein [Myxococcota bacterium] diamond 141 47.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30895630 30895630 PRJNA235310_P_NODE_4474_length_176_cov_1.228346_g4448_i0 PRJNA235310 4474 176 1.228346 2.16188896 Polyangiaceae bacterium 2268199 Bacteria Bacteria 54.7 9.15e-7   NR HQP36693.1 2268199 g4448 i0 60.5 0.732954545454545 43 16 71.6 1 1 126 523 565 HQP36693.1 hypothetical protein [Polyangiaceae bacterium] diamond 129 54.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31021896 31021896 PRJNA235310_P_NODE_3555_length_200_cov_1.304636_g3529_i0 PRJNA235310 3555 200 1.304636 2.609272 Myxococcota bacterium 2818507 Bacteria Bacteria 59.3 2.19e-8   NR MFT4628491.1 2818507 g3529 i0 61.9 1.23 42 16 63 0 127 2 4 45 MFT4628491.1 pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide acyltransferase (E2) component [Myxococcota bacterium] diamond 246 59.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31401419 31401419 PRJNA235310_P_NODE_636_length_486_cov_1.704805_g610_i0 PRJNA235310 636 486 1.704805 8.2853523 Polyangia bacterium 3058050 Bacteria Bacteria 53.5 8e-5   NR MDY0000024.1 3058050 g610 i0 38.8 0.604938271604938 98 44 51.9 4 136 387 263 358 MDY0000024.1 hypothetical protein [Polyangia bacterium] diamond 294 53.5 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
31559561 31559561 PRJNA235310_P_NODE_336_length_617_cov_1.875000_g313_i0 PRJNA235310 336 617 1.875 11.56875 Myxococcota bacterium 2818507 Bacteria Bacteria 121 1.11e-28   NR MEE3329137.1 2818507 g313 i0 38.8 0.889789303079417 183 92 81.2 9 605 105 168 346 MEE3329137.1 hypothetical protein [Myxococcota bacterium] diamond 549 121 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31938796 31938796 PRJNA235310_P_NODE_3717_length_196_cov_1.054422_g3691_i0 PRJNA235310 3717 196 1.054422 2.06666712 Myxococcales bacterium 2026763 Bacteria Bacteria 42.4 0.00629   NR MBR58855.1 2026763 g3691 i0 47.1 0.780612244897959 51 20 78.1 2 2 154 43 86 MBR58855.1 integration host factor [Myxococcales bacterium] diamond 153 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32287306 32287306 PRJNA235310_P_NODE_5819_length_165_cov_0.896552_g5793_i0 PRJNA235310 5819 165 0.896552 1.4793108 Kofleriaceae bacterium 2212474 Bacteria Bacteria 59.3 1.9e-8   NR MEZ4361122.1 2212474 g5793 i0 53.7 0.981818181818182 54 23 98.2 1 165 4 1848 1899 MEZ4361122.1 Ig-like domain-containing protein [Kofleriaceae bacterium] diamond 162 59.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32445429 32445429 PRJNA235310_P_NODE_5519_length_166_cov_0.888889_g5493_i0 PRJNA235310 5519 166 0.888889 1.47555574 Polyangium sp. 3409587 Bacteria Bacteria 48.9 8.89e-5   NR HRI69348.1 57 g5493 i0 41.5 0.957831325301205 53 29 95.8 1 2 160 109 159 HRI69348.1 FG-GAP-like repeat-containing protein [Polyangium sp.] diamond 159 48.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
32697542 32697542 PRJNA235310_P_NODE_1880_length_289_cov_1.495833_g1854_i0 PRJNA235310 1880 289 1.495833 4.32295737 Kofleriaceae bacterium 2212474 Bacteria Bacteria 50.1 1.59e-4   NR HWU90772.1 2212474 g1854 i0 42.6 2.06574394463668 68 35 69.6 3 3 203 172 236 HWU90772.1 hypothetical protein [Kofleriaceae bacterium] diamond 597 50.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;