RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA235310" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA235310 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367346 367346 PRJNA235310_P_NODE_2341_length_253_cov_1.127451_g2315_i0 PRJNA235310 2341 253 1.127451 2.85245103 Proleptomonas faecicola 149084 SAR_Eukaryotes SAR_Eukaryotes 276 1.2499999999999998e-69   NTclustered gi|302026150|gb|GQ377654.1| 149084 g2315 i0 86.454 97.6166007905138 251 34 99 0 3 253 932 1182 Proleptomonas faecicola beta-tubulin (Btub) gene, partial cds blastn 24697 276 1 Eukaryota Sar   Cercozoa   Glissomonadida   Proleptomonas Proleptomonas faecicola
5470696 5470696 PRJNA235310_P_NODE_2065_length_273_cov_1.263393_g2039_i0 PRJNA235310 2065 273 1.263393 3.44906289 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 80.1 4.58e-16   NR MES1908571.1 1215613 g2039 i0 52.2 0.989010989010989 90 42 98.9 1 2 271 68 156 MES1908571.1 hypothetical protein [Cercozoa sp. M6MM] diamond 270 80.1 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
6159389 6159389 PRJNA235310_P_NODE_5885_length_164_cov_1.356522_g5859_i0 PRJNA235310 5885 164 1.356522 2.22469608 Imbricatea 1736114 SAR_Eukaryotes SAR_Eukaryotes 124 2.86e-24   NTclustered gi|160337402|gb|EF455799.1| 188939 g5859 i0 81.065 61.530487804878 169 20 99 6 2 164 440 602 Thaumatomonas seravini beta-tubulin (btub) gene, partial cds blastn 10091 124 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomonas Thaumatomonas seravini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;