RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA235310", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA235310 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28210826 28210826 PRJNA235310_P_NODE_5946_length_164_cov_0.904348_g5920_i0 PRJNA235310 5946 164 0.904348 1.48313072 Spirochaetales bacterium 2026792 Bacteria Bacteria 43.5 0.00522   NR MCK5672650.1 2026792 g5920 i0 38.5 0.951219512195122 52 32 95.1 0 1 156 2 53 MCK5672650.1 CDP-alcohol phosphatidyltransferase family protein [Spirochaetales bacterium] diamond 156 43.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
30691992 30691992 PRJNA235310_P_NODE_3213_length_212_cov_1.257669_g3187_i0 PRJNA235310 3213 212 1.257669 2.66625828 root 1 Root_unresolved Root_unresolved 99 3.429999999999999e-23   NR MDR1971276.1 166 g3187 i0 73.9 7.78301886792453 69 18 97.6 0 3 209 108 176 MDR1971276.1 SDR family oxidoreductase [Treponema sp.] diamond 1650 99 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
31369814 31369814 PRJNA235310_P_NODE_616_length_491_cov_2.108597_g591_i0 PRJNA235310 616 491 2.108597 10.35321127 Leptospiraceae bacterium 2026757 Bacteria Bacteria 68.9 3.7e-10   NR MCB1321430.1 2026757 g591 i0 53.4 0.354378818737271 58 27 35.4 0 19 192 185 242 MCB1321430.1 carbonic anhydrase family protein [Leptospiraceae bacterium] diamond 174 68.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae   Leptospiraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;