RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA235310", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA235310 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26662177 26662177 PRJNA235310_P_NODE_5141_length_168_cov_0.873950_g5115_i0 PRJNA235310 5141 168 0.87395 1.468236 Catenaria anguillulae PL171 765915 Fungi Fungi 63.5 2.47e-11   NR ORZ38132.1 765915 g5115 i0 52.9 1.82142857142857 51 24 91.1 0 157 5 1 51 ORZ38132.1 hypothetical protein BCR44DRAFT_42605 [Catenaria anguillulae PL171] diamond 306 63.5 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
28305694 28305694 PRJNA235310_P_NODE_2726_length_231_cov_1.423077_g2700_i0 PRJNA235310 2726 231 1.423077 3.28730787 Blastocladiella emersonii ATCC 22665 1313167 Fungi Fungi 45.1 6.18e-4   NR KAI9168532.1 1313167 g2700 i0 43.8 1.14285714285714 48 27 62.3 0 66 209 1 48 KAI9168532.1 hypothetical protein H9P43_007905 [Blastocladiella emersonii ATCC 22665] diamond 264 45.1 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella emersonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;