RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA235310" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA235310 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30421912 30421912 PRJNA235310_P_NODE_2173_length_265_cov_1.481481_g2147_i0 PRJNA235310 2173 265 1.481481 3.92592465 Microvenator marinus 2600177 Bacteria Bacteria 55.5 1.61e-6   NR WP_146962556.1 2600177 g2147 i0 56.3 0.543396226415094 48 19 54.3 1 198 55 356 401 WP_146962556.1 hypothetical protein [Microvenator marinus] diamond 144 55.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
30755308 30755308 PRJNA235310_P_NODE_114_length_862_cov_1.564576_g98_i0 PRJNA235310 114 862 1.564576 13.48664512 Myxococcota 2818505 Bacteria Bacteria 139 3.85e-34   NR PKN55183.1 2013741 g98 i0 45.1 1.84106728538283 175 87 57.8 3 746 249 258 432 PKN55183.1 MAG: hypothetical protein CVU56_22585 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 1587 139 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;