RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA235310", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA235310 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16359062 16359062 PRJNA235310_P_NODE_3413_length_205_cov_1.205128_g3387_i0 PRJNA235310 3413 205 1.205128 2.4705124 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 224 3.579999999999999e-54   NTclustered gi|66932474|gb|AY818732.1| 46433 g3387 i0 86.473 94.8536585365854 207 24 100 4 1 205 1221 1425 Reticulomyxa filosa clone A4 alpha tubulin gene, partial sequence blastn 19445 224 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32097115 32097115 PRJNA235310_P_NODE_6058_length_163_cov_1.368421_g6032_i0 PRJNA235310 6058 163 1.368421 2.23052623 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 67 3.32e-11   NR ETO27554.1 46433 g6032 i0 59.6 0.957055214723926 52 21 95.7 0 158 3 403 454 ETO27554.1 hypothetical protein RFI_09578 [Reticulomyxa filosa] diamond 156 67 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;