RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA235310", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA235310 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27200220 27200220 PRJNA235310_P_NODE_3702_length_196_cov_1.360544_g3676_i0 PRJNA235310 3702 196 1.360544 2.66666624 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 75.9 4.21e-14   NR KAJ5080194.1 1746090 g3676 i0 50.8 2.00510204081633 65 32 99.5 0 196 2 441 505 KAJ5080194.1 oxysterol-binding protein [Anaeramoeba ignava] diamond 393 75.9 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
27232007 27232007 PRJNA235310_P_NODE_5823_length_165_cov_0.896552_g5797_i0 PRJNA235310 5823 165 0.896552 1.4793108 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 85.5 5.29e-18   NR KAJ6228763.1 1746091 g5797 i0 70.4 1.96363636363636 54 16 98.2 0 164 3 231 284 KAJ6228763.1 guanine nucleotide-binding protein g(o) subunit alpha [Anaeramoeba flamelloides] diamond 324 85.5 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
27611206 27611206 PRJNA235310_P_NODE_344_length_611_cov_1.576512_g321_i0 PRJNA235310 344 611 1.576512 9.63248832 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 50.1 0.0013   NR KWX14910.1 1394984 g321 i0 40.2 0.810147299509002 87 38 42.7 4 134 394 96 168 KWX14910.1 Variant-specific surface protein [Giardia intestinalis assemblage B] diamond 495 50.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
27832052 27832052 PRJNA235310_P_NODE_4_length_2327_cov_4.452590_g3_i0 PRJNA235310 4 2327 4.45259 103.6117693 Kipferlia bialata 797122 Fornicata other_Eukaryota 52.4 0.0125   NR GIQ80334.1 797122 g3 i0 27.3 0.264288783841856 205 129 24.1 7 660 1220 719 921 GIQ80334.1 hypothetical protein KIPB_001114, partial [Kipferlia bialata] diamond 615 52.4 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
32760620 32760620 PRJNA235310_P_NODE_2520_length_243_cov_1.092784_g2494_i0 PRJNA235310 2520 243 1.092784 2.65546512 Paratrimastix pyriformis 342808 Preaxostyla other_Eukaryota 43.5 0.0185   NR KAJ4455179.1 342808 g2494 i0 43.1 0.62962962962963 51 27 60.5 1 2 148 80 130 KAJ4455179.1 hypothetical protein PAPYR_9911 [Paratrimastix pyriformis] diamond 153 43.5 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
32760622 32760622 PRJNA235310_P_NODE_3500_length_201_cov_1.710526_g3474_i0 PRJNA235310 3500 201 1.710526 3.43815726 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 52.4 4.62e-6   NR KAJ3432453.1 1746091 g3474 i0 49.1 2.40298507462687 53 27 79.1 0 26 184 147 199 KAJ3432453.1 transmembrane emp24 domain-containing protein [Anaeramoeba flamelloides] diamond 483 52.4 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;