RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA235310", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA235310 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4194425 4194425 PRJNA235310_P_NODE_1824_length_294_cov_1.583673_g1798_i0 PRJNA235310 1824 294 1.583673 4.65599862 Nolandella sp. ATCC 50913 498005 Tubulinea other_Eukaryota 254 6.97e-63   NTclustered gi|167859735|gb|EU273448.1| 498005 g1798 i0 82.474 94.8809523809524 291 49 99 2 5 294 467 756 Nolandella sp. ATCC 50913 alpha-tubulin gene, partial cds blastn 27895 254 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. ATCC 50913
13121190 13121190 PRJNA235310_P_NODE_5071_length_168_cov_0.873950_g5045_i0 PRJNA235310 5071 168 0.87395 1.468236 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 82.4 1.8e-11   NTclustered gi|423292021|gb|JQ519456.1| 200886 g5045 i0 86.486 7.77976190476191 74 10 44 0 6 79 351 424 Rhizamoeba saxonica clone JG10.147_g3 actin gene, partial cds blastn 1307 82.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;