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contig_metadata

45 rows where bioproject = "PRJNA229468" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 45 ✖

tax_kingdom 1

bioproject 1

  • PRJNA229468 · 45 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367287 367287 PRJNA229468_S_NODE_1261_length_161_cov_0.901786_g1248_i0 PRJNA229468 1261 161 0.901786 1.45187546 Sphingomonas kaistensis 298708 Bacteria Bacteria 281 1.57e-71   NTclustered gi|2688290521|gb|CP145607.1| 298708 g1248 i0 98.137 1 161 3 100 0 1 161 2723996 2724156 Sphingomonas kaistensis strain MA4R chromosome, complete genome blastn 161 281 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas kaistensis
6159313 6159313 PRJNA229468_S_NODE_25_length_862_cov_18.254613_g21_i0 PRJNA229468 25 862 18.254613 157.35476406 Escherichia 561 Bacteria Bacteria 1592 0   NTclustered gi|2023981091|gb|CP072662.1| 562 g21 i0 100 669.966357308585 862 0 100 0 1 862 3418530 3419391 Escherichia coli strain BW25113 frmA KO chromosome blastn 577511 1592 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
8709270 8709270 PRJNA229468_S_NODE_1247_length_161_cov_0.910714_g1234_i0 PRJNA229468 1247 161 0.910714 1.46624954 Pseudomonas 286 Bacteria Bacteria 287 3.37e-73   NTclustered gi|1751056302|gb|CP044074.1| 47885 g1234 i0 98.758 391.074534161491 161 2 100 0 1 161 1238424 1238264 Pseudomonas oryzihabitans strain FDAARGOS_657 chromosome, complete genome blastn 62963 287 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas oryzihabitans
9295358 9295358 PRJNA229468_S_NODE_1188_length_163_cov_0.894737_g1175_i0 PRJNA229468 1188 163 0.894737 1.45842131 Burkholderiales bacterium 1891238 Bacteria Bacteria 61.2 3.8e-9   NR MCZ2292184.1 1891238 g1175 i0 60.4 1.95092024539877 53 21 97.5 0 162 4 58 110 MCZ2292184.1 phage tail protein [Burkholderiales bacterium] diamond 318 61.2 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales     Burkholderiales bacterium
9984667 9984667 PRJNA229468_S_NODE_528_length_218_cov_2.106509_g515_i0 PRJNA229468 528 218 2.106509 4.59218962 Pseudogemmobacter 2663134 Bacteria Bacteria 359 1.01e-94   NTclustered gi|1382845068|gb|CP020470.1| 1075 g515 i0 96.33 186.97247706422 218 8 100 0 1 218 2473045 2473262 Fuscovulum blasticum strain 28/5 chromosome, complete genome blastn 40760 359 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Pseudogemmobacter Pseudogemmobacter blasticus
10571337 10571337 PRJNA229468_S_NODE_429_length_239_cov_1.800000_g416_i0 PRJNA229468 429 239 1.8 4.302 Paroceanicella profunda 2579971 Bacteria Bacteria 355 1.46e-93   NTclustered gi|1707807931|gb|CP040819.1| 2579971 g416 i0 94.397 148.384937238494 232 11 97 2 1 231 538454 538684 Paroceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence blastn 35464 355 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paroceanicella Paroceanicella profunda
10571339 10571339 PRJNA229468_S_NODE_629_length_204_cov_1.787097_g616_i0 PRJNA229468 629 204 1.787097 3.64567788 Caulobacter vibrioides 155892 Bacteria Bacteria 377 2.59e-100   NTclustered gi|2513399286|emb|OX638199.1| 155892 g616 i0 100 161.975490196078 204 0 100 0 1 204 3625192 3625395 MAG: Caulobacter vibrioides isolate c1db9d16-026a-43e8-9d2b-e4c5db0a04e5 genome assembly, chromosome: 1 blastn 33043 377 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides
11259791 11259791 PRJNA229468_S_NODE_129_length_424_cov_2.952000_g116_i0 PRJNA229468 129 424 2.952 12.51648 Pandoraea 93217 Bacteria Bacteria 778 0   NTclustered gi|1008420858|gb|CP007506.3| 93220 g116 i0 99.764 268.507075471698 424 1 100 0 1 424 1076014 1075591 Pandoraea pnomenusa strain RB38 chromosome, complete genome blastn 113847 778 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea pnomenusa
11845848 11845848 PRJNA229468_S_NODE_410_length_245_cov_1.193878_g397_i0 PRJNA229468 410 245 1.193878 2.9250011 Sphingomonas guangdongensis 1141890 Bacteria Bacteria 387 5.34e-103   NTclustered gi|959495012|ref|NR_133863.1| 1141890 g397 i0 95.161 99.8448979591837 248 6 99 6 2 245 265 20 Sphingomonas guangdongensis strain 9NM-8 16S ribosomal RNA, partial sequence blastn 24462 387 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas guangdongensis
11845854 11845854 PRJNA229468_S_NODE_850_length_181_cov_1.545455_g837_i0 PRJNA229468 850 181 1.545455 2.79727355 Neotabrizicola shimadae 2807096 Bacteria Bacteria 268 1.3999999999999999e-67   NTclustered gi|2081593300|gb|CP069370.1| 2807096 g837 i0 93.37 150.635359116022 181 12 100 0 1 181 2913230 2913050 Neotabrizicola shimadae strain N10 chromosome, complete genome blastn 27265 268 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Neotabrizicola Neotabrizicola shimadae
12535169 12535169 PRJNA229468_S_NODE_1050_length_167_cov_1.355932_g1037_i0 PRJNA229468 1050 167 1.355932 2.26440644 Acinetobacter 469 Bacteria Bacteria 303 3.5e-78   NTclustered gi|1958425625|gb|CP068206.1| 40214 g1037 i0 100 675.520958083832 164 0 100 0 1 164 469507 469670 Acinetobacter johnsonii strain FDAARGOS_1092 chromosome, complete genome blastn 112812 303 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii
12535171 12535171 PRJNA229468_S_NODE_1170_length_163_cov_2.061404_g1157_i0 PRJNA229468 1170 163 2.061404 3.36008852 Moraxellaceae 468 Bacteria Bacteria 302 1.22e-77   NTclustered gi|2593446548|gb|OR699078.1| 479 g1157 i0 100 290.024539877301 163 0 100 0 1 163 614 776 Moraxella sp. strain Hz 62-2 23S ribosomal RNA gene, partial sequence blastn 47274 302 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Moraxella Moraxella sp.
12535172 12535172 PRJNA229468_S_NODE_210_length_332_cov_7.409894_g197_i0 PRJNA229468 210 332 7.409894 24.60084808 Pseudomonadati 3379134 Bacteria Bacteria 614 3.1799999999999995e-171   NTclustered gi|1811468835|gb|MT101737.1| 306 g197 i0 100 132.009036144578 332 0 100 0 1 332 16 347 Pseudomonas sp. strain MWU13-2517 16S ribosomal RNA gene, partial sequence blastn 43827 614 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp.
13121077 13121077 PRJNA229468_S_NODE_1031_length_168_cov_1.285714_g1018_i0 PRJNA229468 1031 168 1.285714 2.15999952 Pseudomonadati 3379134 Bacteria Bacteria 81.3 3.63e-16   NR WP_044427194.1 393310 g1018 i0 66.7 5.89285714285714 54 18 96.4 0 4 165 314 367 WP_044427194.1 glucose-6-phosphate isomerase [Skermanella aerolata] diamond 990 81.6 0.996323529411765 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodospirillales Azospirillaceae Skermanella Skermanella aerolata
13121081 13121081 PRJNA229468_S_NODE_51_length_656_cov_5.415157_g44_i0 PRJNA229468 51 656 5.415157 35.52342992 Pseudomonas sp. Seg1 2678259 Bacteria Bacteria 1195 0   NTclustered gi|2030790783|dbj|AP021903.1| 2678259 g44 i0 99.543 528.003048780488 656 3 100 0 1 656 871253 870598 Pseudomonas sp. Seg1 DNA, complete genome blastn 346370 1195 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas sp. Seg1
13121085 13121085 PRJNA229468_S_NODE_971_length_172_cov_1.886179_g958_i0 PRJNA229468 971 172 1.886179 3.24422788 Acinetobacter johnsonii 40214 Bacteria Bacteria 313 5.989999999999998e-81   NTclustered gi|1588041121|gb|CP037424.1| 40214 g958 i0 99.419 644.075581395349 172 1 100 0 1 172 2053743 2053914 Acinetobacter johnsonii strain M19 chromosome, complete genome blastn 110781 313 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii
13809993 13809993 PRJNA229468_S_NODE_131_length_419_cov_4.645946_g118_i0 PRJNA229468 131 419 4.645946 19.46651374 Gammaproteobacteria 1236 Bacteria Bacteria 774 0   NTclustered gi|2643672927|gb|CP133209.1| 294 g118 i0 100 541.081145584726 419 0 100 0 1 419 2548 2966 Pseudomonas fluorescens strain CFBP2392 chromosome, complete genome blastn 226713 774 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas fluorescens
15670086 15670086 PRJNA229468_S_NODE_133_length_416_cov_2.623978_g120_i0 PRJNA229468 133 416 2.623978 10.91574848 Nevskia ramosa 64002 Bacteria Bacteria 708 0   NTclustered gi|1004607053|gb|KT865761.1| 64002 g120 i0 97.356 204.891826923077 416 11 100 0 1 416 1503 1088 Nevskia ramosa strain DSM 11499 23S ribosomal RNA gene, partial sequence blastn 85235 708 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Nevskia Nevskia ramosa
16358985 16358985 PRJNA229468_S_NODE_893_length_178_cov_1.558140_g880_i0 PRJNA229468 893 178 1.55814 2.7734892 Acinetobacter 469 Bacteria Bacteria 329 6.21e-86   NTclustered gi|2456158263|gb|CP119200.1| 40214 g880 i0 100 640.533707865169 178 0 100 0 1 178 167112 166935 Acinetobacter johnsonii strain AJ572 chromosome, complete genome blastn 114015 329 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter johnsonii
16944573 16944573 PRJNA229468_S_NODE_874_length_179_cov_1.915385_g861_i0 PRJNA229468 874 179 1.915385 3.42853915 Neotabrizicola shimadae 2807096 Bacteria Bacteria 309 8.15e-80   NTclustered gi|2081593300|gb|CP069370.1| 2807096 g861 i0 97.765 189.782122905028 179 4 100 0 1 179 2913819 2913641 Neotabrizicola shimadae strain N10 chromosome, complete genome blastn 33971 309 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Neotabrizicola Neotabrizicola shimadae
17634186 17634186 PRJNA229468_S_NODE_454_length_232_cov_2.393443_g441_i0 PRJNA229468 454 232 2.393443 5.55278776 Bradyrhizobium 374 Bacteria Bacteria 429 8.2e-116   NTclustered gi|2484553652|gb|CP121667.1| 280333 g441 i0 100 124.724137931034 232 0 100 0 1 232 1249687 1249456 Bradyrhizobium pachyrhizi strain CB1923 chromosome, complete genome blastn 28936 429 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium pachyrhizi
18908029 18908029 PRJNA229468_S_NODE_175_length_360_cov_2.954984_g162_i0 PRJNA229468 175 360 2.954984 10.6379424 Janthinobacterium 29580 Bacteria Bacteria 660 0   NTclustered gi|1245314810|gb|CP023422.1| 368607 g162 i0 99.722 550.130555555556 360 1 100 0 1 360 208423 208064 Janthinobacterium svalbardensis strain PAMC 27463 chromosome, complete genome blastn 198047 660 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium svalbardensis
18908030 18908030 PRJNA229468_S_NODE_535_length_216_cov_1.526946_g522_i0 PRJNA229468 535 216 1.526946 3.29820336 Ralstonia 48736 Bacteria Bacteria 399 5.909999999999999e-107   NTclustered gi|2209824596|gb|CP093304.1| 190721 g522 i0 100 179.00462962963 216 0 100 0 1 216 1753465 1753250 Ralstonia insidiosa strain 15-1563-3 chromosome 2, complete sequence blastn 38665 399 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Ralstonia Ralstonia insidiosa
19493247 19493247 PRJNA229468_S_NODE_636_length_204_cov_0.922581_g623_i0 PRJNA229468 636 204 0.922581 1.88206524 root 1 Root_unresolved Root_unresolved 119 3.82e-33   NR WP_336506879.1 573 g623 i0 77.6 86.6470588235294 67 15 98.5 0 2 202 21 87 WP_336506879.1 30S ribosomal protein S8, partial [Klebsiella pneumoniae] diamond 17676 120 0.991666666666667 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
20182616 20182616 PRJNA229468_S_NODE_556_length_213_cov_15.201220_g543_i0 PRJNA229468 556 213 15.20122 32.3785986 Enterobacteriaceae 543 Bacteria Bacteria 394 2.7e-105   NTclustered gi|2650988455|gb|CP142548.1| 562 g543 i0 100 669.234741784038 213 0 100 0 1 213 186534 186322 Escherichia coli strain ExPEC_A382 chromosome, complete genome blastn 142547 394 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
21458300 21458300 PRJNA229468_S_NODE_337_length_271_cov_3.707207_g324_i0 PRJNA229468 337 271 3.707207 10.04653097 Pandoraea 93217 Bacteria Bacteria 494 3.44e-135   NTclustered gi|662020077|ref|NR_121964.1| 93220 g324 i0 99.63 294.911439114391 270 1 99 0 1 270 2604 2873 Pandoraea pnomenusa strain 3kgm 23S ribosomal RNA gene, complete sequence blastn 79921 494 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Pandoraea Pandoraea pnomenusa
22043869 22043869 PRJNA229468_S_NODE_258_length_311_cov_2.286260_g245_i0 PRJNA229468 258 311 2.28626 7.1102686 Nevskia ramosa 64002 Bacteria Bacteria 569 6.489999999999998e-158   NTclustered gi|1004607053|gb|KT865761.1| 64002 g245 i0 99.678 246.131832797428 311 1 100 0 1 311 1490 1800 Nevskia ramosa strain DSM 11499 23S ribosomal RNA gene, partial sequence blastn 76547 569 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Nevskiales Nevskiaceae Nevskia Nevskia ramosa
22043872 22043872 PRJNA229468_S_NODE_658_length_202_cov_1.000000_g645_i0 PRJNA229468 658 202 1 2.02 Undibacterium cyanobacteriorum 3073561 Bacteria Bacteria 351 1.55e-92   NTclustered gi|2575695762|gb|CP133720.1| 3073561 g645 i0 98.02 415.717821782178 202 4 100 0 1 202 740511 740310 Undibacterium cyanobacteriorum strain 20NA77.5 chromosome, complete genome blastn 83975 351 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Undibacterium Undibacterium cyanobacteriorum
22733343 22733343 PRJNA229468_S_NODE_1298_length_156_cov_2.065421_g1285_i0 PRJNA229468 1298 156 2.065421 3.22205676 Janthinobacterium 29580 Bacteria Bacteria 283 4.1899999999999994e-72   NTclustered gi|1245314810|gb|CP023422.1| 368607 g1285 i0 99.359 484.50641025641 156 1 100 0 1 156 1051565 1051720 Janthinobacterium svalbardensis strain PAMC 27463 chromosome, complete genome blastn 75583 283 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Oxalobacteraceae Janthinobacterium Janthinobacterium svalbardensis
22733347 22733347 PRJNA229468_S_NODE_578_length_212_cov_1.134969_g565_i0 PRJNA229468 578 212 1.134969 2.40613428 Acidovorax 12916 Bacteria Bacteria 342 9.879999999999999e-90   NTclustered gi|1004607049|gb|KT865757.1| 12917 g565 i0 95.775 254.660377358491 213 7 100 2 1 212 86 297 Acidovorax facilis strain DSM 649 23S ribosomal RNA gene, partial sequence blastn 53988 342 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax facilis
24008525 24008525 PRJNA229468_S_NODE_539_length_216_cov_0.916168_g526_i0 PRJNA229468 539 216 0.916168 1.97892288 Hyphomicrobiales 356 Bacteria Bacteria 139 1.42e-28   NTclustered gi|1973548085|gb|CP063362.1| 2528964 g526 i0 80.556 6.08796296296296 180 35 83 0 22 201 4958646 4958467 Xanthobacter dioxanivorans strain YN2 chromosome, complete genome blastn 1315 139 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Xanthobacteraceae Xanthobacter Xanthobacter dioxanivorans
25282659 25282659 PRJNA229468_S_NODE_920_length_176_cov_1.960630_g907_i0 PRJNA229468 920 176 1.96063 3.4507088 root 1 Root_unresolved Root_unresolved 326 7.92e-85   NTclustered gi|2700484197|gb|CP147774.1| 80878 g907 i0 100 387.005681818182 176 0 100 0 1 176 2502200 2502025 Acidovorax temperans strain AA22 chromosome blastn 68113 326 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax temperans
26648402 26648402 PRJNA229468_S_NODE_1061_length_167_cov_0.864407_g1048_i0 PRJNA229468 1061 167 0.864407 1.44355969 Rhodobacterales 204455 Bacteria Bacteria 89.7 3.69e-19   NR WP_055188731.1 154981 g1048 i0 74.5 16.7964071856287 55 14 98.8 0 166 2 166 220 WP_055188731.1 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase [Aliiroseovarius crassostreae] diamond 2805 89.7 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Aliiroseovarius Aliiroseovarius crassostreae
27042402 27042402 PRJNA229468_S_NODE_682_length_198_cov_0.939597_g669_i0 PRJNA229468 682 198 0.939597 1.86040206 Klebsiella pneumoniae 573 Bacteria Bacteria 50.1 3.3e-6   NR WP_217900948.1 573 g669 i0 69.2 0.393939393939394 26 8 39.4 0 116 39 1 26 WP_217900948.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 78 50.1 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
27091800 27091800 PRJNA229468_S_NODE_402_length_248_cov_1.025126_g389_i0 PRJNA229468 402 248 1.025126 2.54231248 root 1 Root_unresolved Root_unresolved 100 1.74e-25   NR WP_171259430.1 470 g389 i0 73.3 82.8870967741936 60 16 72.6 0 181 2 29 88 WP_171259430.1 hypothetical protein, partial [Acinetobacter baumannii] diamond 20556 101 0.99009900990099 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
27390248 27390248 PRJNA229468_S_NODE_1123_length_165_cov_0.879310_g1110_i0 PRJNA229468 1123 165 0.87931 1.4508615 Sphingobium sp. SYK-6 627192 Bacteria Bacteria 60.1 5.68e-9   NR WP_041392175.1 627192 g1110 i0 66 4.65454545454545 50 16 90.9 1 160 11 8 56 WP_041392175.1 SDR family NAD(P)-dependent oxidoreductase [Sphingobium sp. SYK-6] diamond 768 60.1 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingobium Sphingobium sp. SYK-6
28021702 28021702 PRJNA229468_S_NODE_945_length_174_cov_1.216000_g932_i0 PRJNA229468 945 174 1.216 2.11584 Methylobacter sp. 2051955 Bacteria Bacteria 65.9 4.78e-11   NR WP_333874727.1 2051955 g932 i0 58.6 2 58 23 98.3 1 172 2 162 219 WP_333874727.1 glucose 1-dehydrogenase [Methylobacter sp.] diamond 348 65.9 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Methylococcales Methylococcaceae Methylobacter Methylobacter sp.
28354969 28354969 PRJNA229468_S_NODE_1206_length_162_cov_2.203540_g1193_i0 PRJNA229468 1206 162 2.20354 3.5697348 root 1 Root_unresolved Root_unresolved 69.3 3.2e-12   NR WP_270022569.1 287 g1193 i0 64.2 525.092592592593 53 19 98.1 0 1 159 104 156 WP_270022569.1 hypothetical protein [Pseudomonas aeruginosa] diamond 85065 69.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa
28463739 28463739 PRJNA229468_S_NODE_346_length_268_cov_1.598174_g333_i0 PRJNA229468 346 268 1.598174 4.28310632 unclassified Mesorhizobium 325217 Bacteria Bacteria 43.5 0.012   NR WP_353641598.1 325217 g333 i0 41.8 1.84701492537313 55 29 58.2 1 231 76 82 136 WP_353641598.1 MULTISPECIES: ion channel [unclassified Mesorhizobium] diamond 495 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Phyllobacteriaceae Mesorhizobium  
28670905 28670905 PRJNA229468_S_NODE_1227_length_162_cov_0.902655_g1214_i0 PRJNA229468 1227 162 0.902655 1.4623011 root 1 Root_unresolved Root_unresolved 47.4 3.57e-5   NR WP_336506774.1 573 g1214 i0 44.2 5.90740740740741 52 29 96.3 0 5 160 6 57 WP_336506774.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 957 47.8 0.99163179916318 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
29032143 29032143 PRJNA229468_S_NODE_328_length_274_cov_1.751111_g315_i0 PRJNA229468 328 274 1.751111 4.79804414 Pseudomonadota bacterium 1977087 Bacteria Bacteria 137 1.15e-39   NR MEL6702651.1 1977087 g315 i0 73 0.974452554744526 89 24 97.4 0 271 5 22 110 MEL6702651.1 30S ribosomal protein S11 [Pseudomonadota bacterium] diamond 267 137 1 Bacteria   Pseudomonadati Pseudomonadota         Pseudomonadota bacterium
30295573 30295573 PRJNA229468_S_NODE_1252_length_161_cov_0.910714_g1239_i0 PRJNA229468 1252 161 0.910714 1.46624954 Candidatus Competibacteraceae bacterium 2053538 Bacteria Bacteria 84.7 1.75e-17   NR NJL71865.1 2053538 g1239 i0 75.5 20.7204968944099 53 13 98.8 0 161 3 384 436 NJL71865.1 class II fumarate hydratase [Candidatus Competibacteraceae bacterium] diamond 3336 84.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria   Candidatus Competibacteraceae   Candidatus Competibacteraceae bacterium
30484790 30484790 PRJNA229468_S_NODE_1253_length_161_cov_0.910714_g1240_i0 PRJNA229468 1253 161 0.910714 1.46624954 Burkholderiales bacterium 1891238 Bacteria Bacteria 55.1 5.37e-7   NR MDE2418557.1 1891238 g1240 i0 67.5 1.73291925465839 40 13 74.5 0 128 9 186 225 MDE2418557.1 hypothetical protein [Burkholderiales bacterium] diamond 279 55.1 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales     Burkholderiales bacterium
30863792 30863792 PRJNA229468_S_NODE_334_length_272_cov_1.125561_g321_i0 PRJNA229468 334 272 1.125561 3.06152592 Acinetobacter baumannii 470 Bacteria Bacteria 62 7.73e-9   NR APX42443.1 470 g321 i0 70.8 0.529411764705882 48 14 52.9 0 146 3 6 53 APX42443.1 beta-lactamase TEM-1, partial [Acinetobacter baumannii] diamond 144 62 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii
31355853 31355853 PRJNA229468_S_NODE_856_length_181_cov_1.136364_g843_i0 PRJNA229468 856 181 1.136364 2.05681884 root 1 Root_unresolved Root_unresolved 91.3 4.03e-21   NR WP_138062938.1 470 g843 i0 82.8 239.270718232044 58 10 96.1 0 1 174 139 196 WP_138062938.1 30S ribosomal protein S7, partial [Acinetobacter baumannii] diamond 43308 92 0.992391304347826 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter baumannii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;