RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA229468", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA229468 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28179159 28179159 PRJNA229468_S_NODE_746_length_190_cov_1.971631_g733_i0 PRJNA229468 746 190 1.971631 3.7460989 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 69.7 5.73e-12   NR HTP27297.1 2510643 g733 i0 50.8 2.77894736842105 61 30 96.3 0 5 187 369 429 HTP27297.1 cytochrome P450 [Anaeromyxobacteraceae bacterium] diamond 528 69.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
29649188 29649188 PRJNA229468_S_NODE_310_length_281_cov_1.099138_g297_i0 PRJNA229468 310 281 1.099138 3.08857778 Bacteria 2 Bacteria Bacteria 118 7.53e-30   NR WP_014397372.1 184914 g297 i0 56 8.74377224199288 91 40 97.2 0 2 274 72 162 WP_014397372.1 alcohol dehydrogenase [Corallococcus coralloides] diamond 2457 119 0.991596638655462 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;