RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA229468" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA229468 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28481367 28481367 PRJNA229468_S_NODE_706_length_196_cov_1.034014_g693_i0 PRJNA229468 706 196 1.034014 2.02666744 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.5 2.53e-6   NR XP_030850438.1 7668 g693 i0 45.8 4.46938775510204 59 31 88.8 1 13 186 200 258 XP_030850438.1 40S ribosomal protein S4 [Strongylocentrotus purpuratus] diamond 876 53.9 0.992578849721707 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
29965458 29965458 PRJNA229468_S_NODE_491_length_226_cov_1.152542_g478_i0 PRJNA229468 491 226 1.152542 2.60474492 Opisthokonta 33154 Echinodermata other_Eukaryota 115 5.18e-29   NR UTQ11156.1 7667 g478 i0 68 19.8982300884956 75 23 99.6 1 225 1 2 75 UTQ11156.1 glyceraldehyde-3-phosphate dehydrogenase [Strongylocentrotus intermedius] diamond 4497 115 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus intermedius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;