RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA229468" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA229468 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9295359 9295359 PRJNA229468_S_NODE_248_length_316_cov_1.681648_g235_i0 PRJNA229468 248 316 1.681648 5.31400768 Ripella sp. 1973050 Discosea other_Eukaryota 477 4.119999999999998e-130   NTclustered gi|2666517889|gb|PP259000.1| 1973050 g235 i0 96.552 88.2088607594937 290 6 91 4 1 289 994 708 Ripella sp. strain CHIESE83/2 small subunit ribosomal RNA gene, partial sequence blastn 27874 477 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp.
9295360 9295360 PRJNA229468_S_NODE_428_length_239_cov_2.336842_g415_i0 PRJNA229468 428 239 2.336842 5.58505238 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 147 2.5e-41   NR XP_004338972.1 1257118 g415 i0 88.6 14.5983263598326 79 9 99.2 0 237 1 10 88 XP_004338972.1 adenine nucleotide translocator, putative [Acanthamoeba castellanii str. Neff] diamond 3489 147 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10571336 10571336 PRJNA229468_S_NODE_329_length_274_cov_1.395556_g316_i0 PRJNA229468 329 274 1.395556 3.82382344 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 160 4.69e-49   NR XP_004339588.1 1257118 g316 i0 85.7 8.96715328467153 91 13 99.6 0 273 1 12 102 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 2457 160 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
10571340 10571340 PRJNA229468_S_NODE_729_length_192_cov_1.251748_g716_i0 PRJNA229468 729 192 1.251748 2.40335616 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 103 7.04e-25   NR XP_004356622.1 1257118 g716 i0 76.6 1 64 15 100 0 192 1 226 289 XP_004356622.1 mitochondrial phosphate transporter, putative [Acanthamoeba castellanii str. Neff] diamond 192 103 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13809991 13809991 PRJNA229468_S_NODE_1111_length_165_cov_2.965517_g1098_i0 PRJNA229468 1111 165 2.965517 4.89310305 Ripella 1217112 Discosea other_Eukaryota 263 5.86e-66   NTclustered gi|1269228383|gb|MF683508.1| 2047821 g1098 i0 99.315 84.3878787878788 146 0 88 1 20 165 209 353 Ripella platypodia clone 26.10.47 18S ribosomal RNA gene, partial sequence blastn 13924 263 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
15670096 15670096 PRJNA229468_S_NODE_953_length_173_cov_2.733871_g940_i0 PRJNA229468 953 173 2.733871 4.72959683 Ripella sp. GP2 1217115 Discosea other_Eukaryota 303 3.63e-78   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g940 i0 98.266 97.4624277456647 173 3 100 0 1 173 188 16 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 16861 303 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
17634187 17634187 PRJNA229468_S_NODE_774_length_188_cov_1.201439_g761_i0 PRJNA229468 774 188 1.201439 2.25870532 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 92 7.58e-20   NR XP_004348463.1 1257118 g761 i0 72.1 3.8936170212766 61 17 97.3 0 5 187 289 349 XP_004348463.1 DEAD box RNA helicase [Acanthamoeba castellanii str. Neff] diamond 732 92 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19493250 19493250 PRJNA229468_S_NODE_96_length_504_cov_1.114286_g84_i0 PRJNA229468 96 504 1.114286 5.61600144 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 155 3.5799999999999993e-43   NR XP_004341795.1 1257118 g84 i0 63.3 2.01190476190476 169 61 100 1 1 504 38 206 XP_004341795.1 guanine nucleotide-binding protein beta subunit, putative [Acanthamoeba castellanii str. Neff] diamond 1014 155 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24008528 24008528 PRJNA229468_S_NODE_779_length_187_cov_2.615942_g766_i0 PRJNA229468 779 187 2.615942 4.89181154 Vannella 95228 Discosea other_Eukaryota 318 1.43e-82   NTclustered gi|399764213|gb|JQ271724.1| 1215628 g766 i0 97.326 81.4010695187166 187 5 100 0 1 187 163 349 Vannella sp. ACN1 18S ribosomal RNA gene, partial sequence blastn 15222 318 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. ACN1
26648403 26648403 PRJNA229468_S_NODE_761_length_189_cov_1.107143_g748_i0 PRJNA229468 761 189 1.107143 2.09250027 root 1 Root_unresolved Root_unresolved 87 2.18e-18   NR XP_004336164.1 1257118 g748 i0 71 6.88888888888889 62 18 98.4 0 188 3 166 227 XP_004336164.1 alcohol dehydrogenase GroESlike domain containing protein [Acanthamoeba castellanii str. Neff] diamond 1302 87.4 0.995423340961098 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28260135 28260135 PRJNA229468_S_NODE_106_length_483_cov_4.246544_g94_i0 PRJNA229468 106 483 4.246544 20.51080752 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 171 1.62e-51   NR 7SOG_A 5755 g94 i0 59.4 5.85093167701863 133 54 82.6 0 5 403 3 135 7SOG_A Chain A, Actophorin [Acanthamoeba castellanii] diamond 2826 172 0.994186046511628 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29063598 29063598 PRJNA229468_S_NODE_348_length_267_cov_2.211009_g335_i0 PRJNA229468 348 267 2.211009 5.90339403 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 155 4.52e-47   NR XP_004352812.1 1257118 g335 i0 85.2 2.97752808988764 88 13 98.9 0 1 264 2 89 XP_004352812.1 ribosomal L37ae protein family [Acanthamoeba castellanii str. Neff] diamond 795 155 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29947671 29947671 PRJNA229468_S_NODE_151_length_394_cov_1.342029_g138_i0 PRJNA229468 151 394 1.342029 5.28759426 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 135 4.9000000000000005e-34   NR XP_004338648.1 1257118 g138 i0 53.4 2.70304568527919 116 53 88.3 1 387 40 226 340 XP_004338648.1 ABC transporter, ATPbinding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 1065 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30091552 30091552 PRJNA229468_S_NODE_352_length_266_cov_1.410138_g339_i0 PRJNA229468 352 266 1.410138 3.75096708 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 119 6.969999999999999e-32   NR XP_004358287.1 1257118 g339 i0 65.9 3.86842105263158 88 29 99.2 1 2 265 6 92 XP_004358287.1 eukaryotic ribosomal protein L18, putative [Acanthamoeba castellanii str. Neff] diamond 1029 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30471075 30471075 PRJNA229468_S_NODE_353_length_266_cov_1.410138_g340_i0 PRJNA229468 353 266 1.410138 3.75096708 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 57.8 2.45e-7   NR ALV66539.1 5755 g340 i0 50 3.43984962406015 74 31 82.3 3 255 37 368 436 ALV66539.1 arginine methyltransferase 5 [Acanthamoeba castellanii] diamond 915 57.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31242982 31242982 PRJNA229468_S_NODE_95_length_505_cov_2.032895_g83_i0 PRJNA229468 95 505 2.032895 10.26611975 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 184 4.649999999999998e-55   NR XP_004340229.1 1257118 g83 i0 62 1.01584158415842 171 56 98 4 495 1 1 168 XP_004340229.1 ribosomal protein L6e, putative [Acanthamoeba castellanii str. Neff] diamond 513 184 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;