RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA229468" and tax_phylum = "Actinomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 13 ✖

tax_kingdom 1

bioproject 1

  • PRJNA229468 · 13 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1056633 1056633 PRJNA229468_S_NODE_961_length_173_cov_1.233871_g948_i0 PRJNA229468 961 173 1.233871 2.13459683 Rothia 32207 Bacteria Bacteria 320 3.61e-83   NTclustered gi|1247210625|gb|CP023510.1| 43675 g948 i0 100 291.132947976879 173 0 100 0 1 173 652615 652443 Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome blastn 50366 320 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa
4884545 4884545 PRJNA229468_S_NODE_644_length_203_cov_0.948052_g631_i0 PRJNA229468 644 203 0.948052 1.92454556 Micrococcales 85006 Bacteria Bacteria 326 9.44e-85   NTclustered gi|1247210625|gb|CP023510.1| 43675 g631 i0 95.567 360.162561576355 203 9 100 0 1 203 652910 653112 Rothia mucilaginosa strain FDAARGOS_369 chromosome, complete genome blastn 73113 326 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia Rothia mucilaginosa
8020686 8020686 PRJNA229468_S_NODE_1007_length_170_cov_1.264463_g994_i0 PRJNA229468 1007 170 1.264463 2.1495871 Lawsonella clevelandensis 1528099 Bacteria Bacteria 300 4.6e-77   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g994 i0 98.256 276.317647058824 172 1 100 1 1 170 552297 552468 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 46974 300 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
8020687 8020687 PRJNA229468_S_NODE_287_length_292_cov_1.263374_g274_i0 PRJNA229468 287 292 1.263374 3.68905208 Arthrobacter dokdonellae 2211210 Bacteria Bacteria 510 3.71e-140   NTclustered gi|1409665507|gb|CP029642.1| 2211210 g274 i0 98.282 458.366438356164 291 5 99 0 2 292 551070 550780 Arthrobacter dokdonellae, complete genome blastn 133843 510 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter dokdonellae
11259789 11259789 PRJNA229468_S_NODE_1149_length_164_cov_1.208696_g1136_i0 PRJNA229468 1149 164 1.208696 1.98226144 Corynebacterium 1716 Bacteria Bacteria 272 9.65e-69   NTclustered gi|2212856580|gb|CP051667.1| 37637 g1136 i0 96.933 323.018292682927 163 3 100 2 4 164 1103762 1103600 Corynebacterium pseudodiphtheriticum strain 10700 chromosome blastn 52975 272 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium pseudodiphtheriticum
13809994 13809994 PRJNA229468_S_NODE_611_length_207_cov_0.955696_g598_i0 PRJNA229468 611 207 0.955696 1.97829072 Modestobacter 88138 Bacteria Bacteria 363 7.369999999999998e-96   NTclustered gi|470491309|ref|NR_077032.1| 477641 g598 i0 99.01 379.289855072464 202 2 98 0 1 202 1018 817 Modestobacter marinus strain BC501 23S ribosomal RNA, complete sequence blastn 78513 363 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Modestobacter Modestobacter marinus
17634189 17634189 PRJNA229468_S_NODE_834_length_182_cov_1.646617_g821_i0 PRJNA229468 834 182 1.646617 2.99684294 Arthrobacter 1663 Bacteria Bacteria 320 3.84e-83   NTclustered gi|2921126289|gb|CP102608.1| 619291 g821 i0 98.352 428.796703296703 182 3 100 0 1 182 459346 459165 Arthrobacter sp. N1 chromosome, complete genome blastn 78041 320 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. N1
21458301 21458301 PRJNA229468_S_NODE_357_length_265_cov_2.222222_g344_i0 PRJNA229468 357 265 2.222222 5.8888883 Cutibacterium 1912216 Bacteria Bacteria 490 4.3299999999999986e-134   NTclustered gi|1446500593|gb|CP031442.1| 1747 g344 i0 100 268.256603773585 265 0 100 0 1 265 56512 56248 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 71088 490 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
22733344 22733344 PRJNA229468_S_NODE_38_length_727_cov_4.001475_g32_i0 PRJNA229468 38 727 4.001475 29.09072325 Cutibacterium 1912216 Bacteria Bacteria 1343 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g32 i0 100 282.95598349381 727 0 100 0 1 727 56164 55438 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 205709 1343 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
25282653 25282653 PRJNA229468_S_NODE_20_length_915_cov_3.091224_g16_i0 PRJNA229468 20 915 3.091224 28.2846996 Cutibacterium 1912216 Bacteria Bacteria 1674 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g16 i0 99.672 280.55737704918 915 3 100 0 1 915 56490 57404 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 256710 1674 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
27358639 27358639 PRJNA229468_S_NODE_423_length_241_cov_1.088542_g410_i0 PRJNA229468 423 241 1.088542 2.62338622 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 96.3 1.0100000000000002e-21   NR HXY94086.1 2080302 g410 i0 65 5.70124481327801 80 25 99.6 2 240 1 70 146 HXY94086.1 SDR family NAD(P)-dependent oxidoreductase [Acidimicrobiia bacterium] diamond 1374 96.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32128984 32128984 PRJNA229468_S_NODE_998_length_170_cov_2.504132_g985_i0 PRJNA229468 998 170 2.504132 4.2570244 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 63.5 6.67e-11   NR MDH5420796.1 2080302 g985 i0 52.9 0.9 51 24 90 0 169 17 20 70 MDH5420796.1 SRPBCC family protein [Acidimicrobiia bacterium] diamond 153 63.5 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32146594 32146594 PRJNA229468_S_NODE_718_length_194_cov_1.406897_g705_i0 PRJNA229468 718 194 1.406897 2.72938018 FCB group 1783270 Bacteria Bacteria 58.9 4.09e-9   NR MET0802013.1 2900548 g705 i0 60.5 2.64432989690722 43 16 64.9 1 194 69 83 125 MET0802013.1 SDR family NAD(P)-dependent oxidoreductase [Actinomycetota bacterium] diamond 513 59.3 0.993254637436762 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;