RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA229468", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA229468 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1642069 1642069 PRJNA229468_S_NODE_642_length_203_cov_0.993506_g629_i0 PRJNA229468 642 203 0.993506 2.01681718 Strongyloides papillosus 174720 Nematoda Nematoda 139 1.3199999999999999e-28   NTclustered gi|687022666|emb|LM525580.1| 174720 g629 i0 83.117 66.8374384236453 154 24 75 2 50 202 237377 237225 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 13568 139 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
7434488 7434488 PRJNA229468_S_NODE_846_length_181_cov_1.931818_g833_i0 PRJNA229468 846 181 1.931818 3.49659058 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 230 6.62e-56   NTclustered gi|687022656|emb|LM525570.1| 174720 g833 i0 89.888 94.6243093922652 178 18 98 0 4 181 200843 200666 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000005 blastn 17127 230 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
29965459 29965459 PRJNA229468_S_NODE_711_length_195_cov_1.746575_g698_i0 PRJNA229468 711 195 1.746575 3.40582125 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 99.4 3.48e-23   NR CDJ95608.1 6289 g698 i0 67.7 22 65 20 100 1 1 195 4 67 CDJ95608.1 Ribosomal protein L37e domain containing protein [Haemonchus contortus] diamond 4290 100 0.994 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
30628651 30628651 PRJNA229468_S_NODE_513_length_221_cov_1.616279_g500_i0 PRJNA229468 513 221 1.616279 3.57197659 Rhabditida 6236 Nematoda Nematoda 63.2 5.86e-10   NR KAK6101993.1 6280 g500 i0 45.2 6.95022624434389 73 34 99.1 1 1 219 26 92 KAK6101993.1 EF-1 guanine nucleotide exchange domain family protein [Brugia pahangi] diamond 1536 63.5 0.995275590551181 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia pahangi
31685716 31685716 PRJNA229468_S_NODE_877_length_179_cov_1.176923_g864_i0 PRJNA229468 877 179 1.176923 2.10669217 Enterobius vermicularis 51028 Nematoda Nematoda 80.5 7.74e-16   NR VDD94536.1 51028 g864 i0 64.9 0.955307262569832 57 20 95.5 0 178 8 317 373 VDD94536.1 unnamed protein product [Enterobius vermicularis] diamond 171 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
32033892 32033892 PRJNA229468_S_NODE_378_length_254_cov_1.648780_g365_i0 PRJNA229468 378 254 1.64878 4.1879012 Pristionchus fissidentatus 1538716 Nematoda Nematoda 52 1.38e-5   NR GMT21298.1 1538716 g365 i0 37.6 1.96062992125984 85 47 93.3 2 1 237 65 149 GMT21298.1 hypothetical protein PFISCL1PPCAC_12595 [Pristionchus fissidentatus] diamond 498 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;