RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA229468", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA229468 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28179158 28179158 PRJNA229468_S_NODE_46_length_669_cov_3.180645_g39_i0 PRJNA229468 46 669 3.180645 21.27851505 Herpetosiphonaceae bacterium 2720503 Bacteria Bacteria 117 3.8999999999999995e-28   NR HZB94728.1 2720503 g39 i0 46.4 0.802690582959641 179 85 76.7 7 74 586 28 203 HZB94728.1 DUF4397 domain-containing protein [Herpetosiphonaceae bacterium] diamond 537 117 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae   Herpetosiphonaceae bacterium
32255731 32255731 PRJNA229468_S_NODE_1078_length_166_cov_2.025641_g1065_i0 PRJNA229468 1078 166 2.025641 3.36256406 Chloroflexota bacterium 2026724 Bacteria Bacteria 63.9 4.72e-11   NR MEZ4515128.1 2026724 g1065 i0 52.8 0.957831325301205 53 25 95.8 0 160 2 41 93 MEZ4515128.1 coactosin family protein [Chloroflexota bacterium] diamond 159 63.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32791914 32791914 PRJNA229468_S_NODE_360_length_265_cov_1.046296_g347_i0 PRJNA229468 360 265 1.046296 2.7726844 Chloroflexia bacterium 2448782 Bacteria Bacteria 76.6 2.21e-14   NR HEX2912625.1 2448782 g347 i0 49.4 1.00754716981132 89 43 99.6 2 264 1 43 130 HEX2912625.1 PfkB family carbohydrate kinase [Chloroflexia bacterium] diamond 267 76.6 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;