RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA229468", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA229468 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9984668 9984668 PRJNA229468_S_NODE_828_length_183_cov_1.141791_g815_i0 PRJNA229468 828 183 1.141791 2.08947753 Trichomonas 5721 Parabasalia other_Eukaryota 87.9 4.27e-13   NTclustered gi|40060517|gb|AY371181.1| 5722 g815 i0 98 0.770491803278688 50 1 27 0 102 151 2495 2544 Trichomonas vaginalis TVGCN20 (gcn20) pseudogene, partial sequence; and papain-like cysteine proteinase (cp2.5.1.1) gene, complete cds blastn 141 87.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26870589 26870589 PRJNA229468_S_NODE_641_length_203_cov_1.324675_g628_i0 PRJNA229468 641 203 1.324675 2.68909025 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.6 3.23e-14   NR XP_001301101.1 412133 g628 i0 55.2 1.98029556650246 67 30 99 0 2 202 98 164 XP_001301101.1 ribosomal protein family [Trichomonas vaginalis G3] diamond 402 73.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28368767 28368767 PRJNA229468_S_NODE_226_length_326_cov_1.104693_g213_i0 PRJNA229468 226 326 1.104693 3.60129918 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 44.3 0.0219   NR XP_001316090.1 412133 g213 i0 41.9 0.395705521472393 43 25 39.6 0 2 130 25 67 XP_001316090.1 ankyrin repeat-containing protein DDB G0279043 family [Trichomonas vaginalis G3] diamond 129 44.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;