RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA222400" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA222400 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27832037 27832037 PRJNA222400_P_NODE_2384_length_320_cov_1.749077_g2351_i0 PRJNA222400 2384 320 1.749077 5.5970464 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 134 2.85e-37   NR MDH3455568.1 2026742 g2351 i0 62.3 1.9875 106 40 99.4 0 2 319 37 142 MDH3455568.1 hypoxanthine phosphoribosyltransferase [Gemmatimonadota bacterium] diamond 636 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28116154 28116154 PRJNA222400_P_NODE_7685_length_167_cov_1.288136_g7652_i0 PRJNA222400 7685 167 1.288136 2.15118712 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.7 0.00733   NR HKI94149.1 2448054 g7652 i0 81.5 0.48502994011976 27 5 48.5 0 67 147 1 27 HKI94149.1 GNAT family N-acetyltransferase [Gemmatimonadales bacterium] diamond 81 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28590033 28590033 PRJNA222400_P_NODE_9407_length_162_cov_0.920354_g9374_i0 PRJNA222400 9407 162 0.920354 1.49097348 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 56.2 1.27e-7   NR MDE3152948.1 2026742 g9374 i0 62 1.85185185185185 50 19 92.6 0 3 152 5 54 MDE3152948.1 NAD(P)H-binding protein [Gemmatimonadota bacterium] diamond 300 56.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;