RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA222400", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA222400 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32241784 32241784 PRJNA222400_P_NODE_4998_length_199_cov_2.193333_g4965_i0 PRJNA222400 4998 199 2.193333 4.36473267 root 1 Root_unresolved Root_unresolved 80.1 1.41e-15   NR EMR73564.1 1198116 g4965 i0 51.6 9.61809045226131 62 29 93.5 1 198 13 349 409 EMR73564.1 acyl-CoA synthetase/AMP-acid ligase [Thermoplasmatales archaeon SCGC AB-539-N05] diamond 1914 80.9 0.990111248454882 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon SCGC AB-539-N05
32255723 32255723 PRJNA222400_P_NODE_3238_length_257_cov_1.413462_g3205_i0 PRJNA222400 3238 257 1.413462 3.63259734 Thermoplasmata archaeon 1906666 Archaea Archaea 60.1 3.51e-8   NR MCX8174265.1 1906666 g3205 i0 39.5 0.945525291828794 81 48 93.4 1 243 4 832 912 MCX8174265.1 S8 family serine peptidase [Thermoplasmata archaeon] diamond 243 60.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;