RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA222400" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA222400 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19493159 19493159 PRJNA222400_P_NODE_3316_length_253_cov_1.598039_g3283_i0 PRJNA222400 3316 253 1.598039 4.04303867 Deltaproteobacteria bacterium RIFCSPHIGHO2_ 2026735 Bacteria Bacteria 143 7.38e-39   NR OGQ26952.1 1797864 g3283 i0 81.9 9.85375494071146 83 15 98.4 0 3 251 78 160 OGQ26952.1 MAG: adenosylhomocysteinase [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_50_15] diamond 2493 143 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_50_15
27579445 27579445 PRJNA222400_P_NODE_1544_length_411_cov_2.886740_g1511_i0 PRJNA222400 1544 411 2.88674 11.8645014 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 51.2 2.41e-4   NR PKN54365.1 2013741 g1511 i0 48.9 0.328467153284672 45 23 32.8 0 273 139 343 387 PKN54365.1 MAG: hypothetical protein CVU56_26920 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 135 51.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
29491637 29491637 PRJNA222400_P_NODE_1150_length_479_cov_4.244186_g1117_i0 PRJNA222400 1150 479 4.244186 20.32965094 Myxococcota 2818505 Bacteria Bacteria 49.7 0.00145   NR PKN54365.1 2013741 g1117 i0 46.7 1.67849686847599 45 24 28.2 0 355 221 343 387 PKN54365.1 MAG: hypothetical protein CVU56_26920 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 804 49.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
32445413 32445413 PRJNA222400_P_NODE_2919_length_277_cov_2.004386_g2886_i0 PRJNA222400 2919 277 2.004386 5.55214922 Microvenator marinus 2600177 Bacteria Bacteria 55.1 2.55e-6   NR WP_146962556.1 2600177 g2886 i0 56.3 0.996389891696751 48 19 52 1 246 103 356 401 WP_146962556.1 hypothetical protein [Microvenator marinus] diamond 276 55.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;