RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA222400", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA222400 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21458258 21458258 PRJNA222400_P_NODE_3177_length_261_cov_1.221698_g3144_i0 PRJNA222400 3177 261 1.221698 3.18863178 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 255 1.69e-63   NTclustered gi|66932474|gb|AY818732.1| 46433 g3144 i0 84.411 91.3831417624521 263 37 100 4 1 261 1133 1393 Reticulomyxa filosa clone A4 alpha tubulin gene, partial sequence blastn 23851 257 0.992217898832685 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27895127 27895127 PRJNA222400_P_NODE_2165_length_339_cov_1.075862_g2132_i0 PRJNA222400 2165 339 1.075862 3.64717218 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 70.5 3.95e-12   NR ETO07901.1 46433 g2132 i0 35.4 1.78761061946903 99 54 83.2 3 11 292 11 104 ETO07901.1 hypothetical protein RFI_29491 [Reticulomyxa filosa] diamond 606 70.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29049805 29049805 PRJNA222400_P_NODE_4308_length_214_cov_1.169697_g4275_i0 PRJNA222400 4308 214 1.169697 2.50315158 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87.8 1.97e-18   NR ETO05798.1 46433 g4275 i0 60 4.5 65 25 89.7 1 19 210 263 327 ETO05798.1 hypothetical protein RFI_31597 [Reticulomyxa filosa] diamond 963 88.2 0.99546485260771 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;