RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA222400", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 9 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 9 ✖

bioproject 1

  • PRJNA222400 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
367262 367262 PRJNA222400_P_NODE_9001_length_163_cov_0.912281_g8968_i0 PRJNA222400 9001 163 0.912281 1.48701803 Pseudomonadati 3379134 Bacteria Bacteria 82.8 7.68e-17   NR WP_068772074.1 1184151 g8968 i0 78.8 5.8159509202454 52 11 95.7 0 161 6 31 82 WP_068772074.1 phosphoglycerate kinase [Termitidicoccus mucosus] diamond 948 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
27249782 27249782 PRJNA222400_P_NODE_483_length_733_cov_2.514620_g455_i0 PRJNA222400 483 733 2.51462 18.4321646 Bacteria 2 Bacteria Bacteria 61.6 6.25e-7   NR MCX6884131.1 2026799 g455 i0 31.3 1.08458390177353 128 83 50.8 2 608 237 44 170 MCX6884131.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 795 62 0.993548387096774 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27832034 27832034 PRJNA222400_P_NODE_1064_length_500_cov_1.917960_g1031_i0 PRJNA222400 1064 500 1.91796 9.5898 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 47 0.00862   NR MBT15889.1 2026801 g1031 i0 29.6 0.648 108 63 60 3 14 313 58 160 MBT15889.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 324 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
28779188 28779188 PRJNA222400_P_NODE_5587_length_190_cov_0.964539_g5554_i0 PRJNA222400 5587 190 0.964539 1.8326241 Opitutaceae bacterium 2006848 Bacteria Bacteria 51.6 1.36e-5   NR HQF39152.1 2006848 g5554 i0 49.2 4.56315789473684 61 29 96.3 1 184 2 305 363 HQF39152.1 serpin family protein [Opitutaceae bacterium] diamond 867 51.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29000700 29000700 PRJNA222400_P_NODE_1368_length_442_cov_1.521628_g1335_i0 PRJNA222400 1368 442 1.521628 6.72559576 Chthoniobacter sp. 2510640 Bacteria Bacteria 61.2 1.16e-7   NR WP_348543608.1 2510640 g1335 i0 35.8 0.834841628959276 123 75 80.8 4 58 414 83 205 WP_348543608.1 beta strand repeat-containing protein, partial [Chthoniobacter sp.] diamond 369 61.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
31053725 31053725 PRJNA222400_P_NODE_1655_length_396_cov_1.285303_g1622_i0 PRJNA222400 1655 396 1.285303 5.08979988 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52.8 6.63e-5   NR MBK9138994.1 2026799 g1622 i0 50 0.378787878787879 50 23 37.9 1 394 245 1265 1312 MBK9138994.1 S8 family serine peptidase [Verrucomicrobiota bacterium] diamond 150 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31545644 31545644 PRJNA222400_P_NODE_2336_length_323_cov_1.503650_g2303_i0 PRJNA222400 2336 323 1.50365 4.8567895 Pseudomonadati 3379134 Bacteria Bacteria 123 1.29e-31   NR PYL06424.1 2026799 g2303 i0 65.2 8.30340557275542 89 31 82.7 0 56 322 1 89 PYL06424.1 MAG: NADPH:quinone reductase [Verrucomicrobiota bacterium] diamond 2682 124 0.991935483870968 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32002224 32002224 PRJNA222400_P_NODE_298_length_891_cov_1.720903_g275_i0 PRJNA222400 298 891 1.720903 15.33324573 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 56.2 6.62e-5   NR MEM7396574.1 2026799 g275 i0 31.3 0.387205387205387 115 74 37 2 533 204 227 341 MEM7396574.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 345 56.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32097097 32097097 PRJNA222400_P_NODE_3118_length_265_cov_1.101852_g3085_i0 PRJNA222400 3118 265 1.101852 2.9199078 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 80.9 1.88e-15   NR MCX6968401.1 2026799 g3085 i0 50.7 0.80377358490566 71 35 80.4 0 50 262 544 614 MCX6968401.1 PAS domain S-box protein [Verrucomicrobiota bacterium] diamond 213 80.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;