RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA217180", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoproteota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27769181 27769181 PRJNA217180_P_NODE_14304_length_163_cov_0.894737_g14204_i0 PRJNA217180 14304 163 0.894737 1.45842131 Thermoproteota archaeon 2056631 Archaea Archaea 47 3.34e-4   NR RDJ35336.1 2056631 g14204 i0 36.4 1.01226993865031 55 34 99.4 1 162 1 42 96 RDJ35336.1 MAG: hypothetical protein DWQ19_11010 [Thermoproteota archaeon] diamond 165 47 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29333849 29333849 PRJNA217180_P_NODE_15029_length_162_cov_0.902655_g14929_i0 PRJNA217180 15029 162 0.902655 1.4623011 Thermoproteati 1783275 Archaea Archaea 56.6 1.32e-7   NR WP_342788287.1 51678 g14929 i0 51 4.57407407407407 49 24 90.7 0 155 9 211 259 WP_342788287.1 GDP-mannose dehydrogenase [Desulfurococcus sp.] diamond 741 57 0.992982456140351 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;