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contig_metadata

18 rows where bioproject = "PRJNA217180", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 18 ✖

tax_phylum 1

  • Myxococcota · 18 ✖

tax_kingdom 1

bioproject 1

  • PRJNA217180 · 18 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1641871 1641871 PRJNA217180_P_NODE_14082_length_164_cov_0.886957_g13982_i0 PRJNA217180 14082 164 0.886957 1.45460948 Polyangiaceae bacterium 2268199 Bacteria Bacteria 83.2 6.14e-17   NR HLV19712.1 2268199 g13982 i0 83 4.22560975609756 47 8 86 0 24 164 1 47 HLV19712.1 ribosome biogenesis GTPase Der [Polyangiaceae bacterium] diamond 693 83.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
10571146 10571146 PRJNA217180_P_NODE_12429_length_167_cov_0.864407_g12329_i0 PRJNA217180 12429 167 0.864407 1.44355969 Cystobacter fuscus 43 Bacteria Bacteria 93.5 8.25e-15   NTclustered gi|2579665545|gb|CP043492.1| 43 g12329 i0 85.87 9.01796407185629 92 7 53 6 3 91 7145013 7145101 Cystobacter fuscus strain Cbf 8 chromosome, complete genome blastn 1506 93.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
26630843 26630843 PRJNA217180_P_NODE_13741_length_164_cov_1.617391_g13641_i0 PRJNA217180 13741 164 1.617391 2.65252124 Polyangiaceae bacterium 2268199 Bacteria Bacteria 47.8 2.17e-4   NR MFO0639668.1 2268199 g13641 i0 40.4 2.67073170731707 52 31 95.1 0 164 9 59 110 MFO0639668.1 hypothetical protein [Polyangiaceae bacterium] diamond 438 47.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27136751 27136751 PRJNA217180_P_NODE_12642_length_167_cov_0.864407_g12542_i0 PRJNA217180 12642 167 0.864407 1.44355969 Polyangiaceae bacterium 2268199 Bacteria Bacteria 55.5 3.64e-7   NR NUP08359.1 2268199 g12542 i0 42 0.898203592814371 50 29 89.8 0 3 152 121 170 NUP08359.1 hypothetical protein [Polyangiaceae bacterium] diamond 150 55.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27200196 27200196 PRJNA217180_P_NODE_12902_length_166_cov_0.871795_g12802_i0 PRJNA217180 12902 166 0.871795 1.4471797 Myxococcaceae bacterium 2484252 Bacteria Bacteria 61.6 1.2e-9   NR MDB4989294.1 2484252 g12802 i0 54 0.903614457831325 50 21 86.7 1 165 22 139 188 MDB4989294.1 hypothetical protein [Myxococcaceae bacterium] diamond 150 61.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28021686 28021686 PRJNA217180_P_NODE_10725_length_181_cov_1.378788_g10625_i0 PRJNA217180 10725 181 1.378788 2.49560628 Myxococcales bacterium 2026763 Bacteria Bacteria 119 5.85e-30   NR MBK6463533.1 2026763 g10625 i0 93.3 0.994475138121547 60 4 99.4 0 181 2 96 155 MBK6463533.1 DNA-packaging protein [Myxococcales bacterium] diamond 180 119 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28337294 28337294 PRJNA217180_P_NODE_15386_length_161_cov_0.910714_g15286_i0 PRJNA217180 15386 161 0.910714 1.46624954 Aetherobacter fasciculatus 888830 Bacteria Bacteria 63.5 5.13e-10   NR WP_346377260.1 888830 g15286 i0 50.9 1.91925465838509 53 26 98.8 0 160 2 143 195 WP_346377260.1 ATP-grasp domain-containing protein [Aetherobacter fasciculatus] diamond 309 63.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Aetherobacter Aetherobacter fasciculatus
28842300 28842300 PRJNA217180_P_NODE_11748_length_172_cov_1.430894_g11648_i0 PRJNA217180 11748 172 1.430894 2.46113768 Myxococcales bacterium 2026763 Bacteria Bacteria 89 7.9e-21   NR MBL0220012.1 2026763 g11648 i0 95.3 0.75 43 2 75 0 129 1 1 43 MBL0220012.1 hypothetical protein [Myxococcales bacterium] diamond 129 89 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28842302 28842302 PRJNA217180_P_NODE_12608_length_167_cov_0.864407_g12508_i0 PRJNA217180 12608 167 0.864407 1.44355969 Polyangiaceae bacterium 2268199 Bacteria Bacteria 52 7.15e-6   NR HEY5954919.1 2268199 g12508 i0 54.4 1.02395209580838 57 23 97 1 163 2 110 166 HEY5954919.1 hypothetical protein [Polyangiaceae bacterium] diamond 171 52 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28873966 28873966 PRJNA217180_P_NODE_12628_length_167_cov_0.864407_g12528_i0 PRJNA217180 12628 167 0.864407 1.44355969 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 77.8 5.68e-15   NR MCK5236079.1 2026735 g12528 i0 69.1 0.988023952095808 55 17 98.8 0 2 166 355 409 MCK5236079.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 165 77.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29568595 29568595 PRJNA217180_P_NODE_9930_length_187_cov_1.427536_g9830_i0 PRJNA217180 9930 187 1.427536 2.66949232 Kofleriaceae bacterium 2212474 Bacteria Bacteria 110 1.68e-28   NR HPH68573.1 2212474 g9830 i0 87.1 0.994652406417112 62 8 99.5 0 187 2 14 75 HPH68573.1 hypothetical protein [Kofleriaceae bacterium] diamond 186 110 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30484780 30484780 PRJNA217180_P_NODE_9553_length_190_cov_0.978723_g9453_i0 PRJNA217180 9553 190 0.978723 1.8595737 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 68.2 1.96e-11   NR MDB4278438.1 2026735 g9453 i0 52.4 0.994736842105263 63 30 99.5 0 189 1 138 200 MDB4278438.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 189 68.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30737347 30737347 PRJNA217180_P_NODE_15894_length_153_cov_2.057692_g15794_i0 PRJNA217180 15894 153 2.057692 3.14826876 Polyangium spumosum 889282 Bacteria Bacteria 58.9 2.36e-9   NR WP_153824984.1 889282 g15794 i0 72.1 0.843137254901961 43 12 84.3 0 129 1 1 43 WP_153824984.1 hypothetical protein [Polyangium spumosum] diamond 129 58.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium spumosum
31907262 31907262 PRJNA217180_P_NODE_13437_length_165_cov_0.879310_g13337_i0 PRJNA217180 13437 165 0.87931 1.4508615 Sandaracinus amylolyticus 927083 Bacteria Bacteria 56.2 4.71e-8   NR WP_236606469.1 927083 g13337 i0 45.3 5.83636363636364 53 29 96.4 0 165 7 2 54 WP_236606469.1 GIY-YIG nuclease family protein [Sandaracinus amylolyticus] diamond 963 56.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
32128967 32128967 PRJNA217180_P_NODE_13758_length_164_cov_1.356522_g13658_i0 PRJNA217180 13758 164 1.356522 2.22469608 Myxococcus xanthus 34 Bacteria Bacteria 77.8 2.45e-15   NR WP_161607106.1 34 g13658 i0 69.2 1.90243902439024 52 16 95.1 0 162 7 56 107 WP_161607106.1 phosphoadenosine phosphosulfate reductase family protein [Myxococcus xanthus] diamond 312 77.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
32463062 32463062 PRJNA217180_P_NODE_13959_length_164_cov_0.886957_g13859_i0 PRJNA217180 13959 164 0.886957 1.45460948 root 1 Root_unresolved Root_unresolved 56.6 1.62e-7   NR RLC27154.1 2026735 g13859 i0 62.8 1.73780487804878 43 16 78.7 0 3 131 33 75 RLC27154.1 MAG: hypothetical protein DRH37_11160, partial [Deltaproteobacteria bacterium] diamond 285 57 0.992982456140351 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32603217 32603217 PRJNA217180_P_NODE_9980_length_187_cov_1.094203_g9880_i0 PRJNA217180 9980 187 1.094203 2.04615961 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.5 8.72e-6   NR MDB4278727.1 2026735 g9880 i0 46.7 1.41176470588235 45 24 72.2 0 25 159 7 51 MDB4278727.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 264 48.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32729184 32729184 PRJNA217180_P_NODE_7780_length_212_cov_1.128834_g7680_i0 PRJNA217180 7780 212 1.128834 2.39312808 Myxococcales bacterium 2026763 Bacteria Bacteria 104 1.04e-24   NR MBK6463553.1 2026763 g7680 i0 89.7 0.820754716981132 58 6 82.1 0 39 212 1 58 MBK6463553.1 hypothetical protein [Myxococcales bacterium] diamond 174 104 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;