RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA217180" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29459815 29459815 PRJNA217180_P_NODE_15570_length_161_cov_0.910714_g15470_i0 PRJNA217180 15570 161 0.910714 1.46624954 FCB group 1783270 Bacteria Bacteria 80.9 4.4e-16   NR MEP6573213.1 2026742 g15470 i0 68.6 10.0434782608696 51 16 95 0 153 1 2035 2085 MEP6573213.1 PAS domain S-box protein [Gemmatimonadota bacterium] diamond 1617 80.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30168567 30168567 PRJNA217180_P_NODE_11872_length_171_cov_1.409836_g11772_i0 PRJNA217180 11872 171 1.409836 2.41081956 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 62.8 1.18e-9   NR MCR4339819.1 2026741 g11772 i0 53.6 0.982456140350877 56 26 98.2 0 3 170 613 668 MCR4339819.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 168 62.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;