RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA217180" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27231990 27231990 PRJNA217180_P_NODE_12983_length_166_cov_0.871795_g12883_i0 PRJNA217180 12983 166 0.871795 1.4471797 Fibrobacterota bacterium 2052160 Bacteria Bacteria 108 3.66e-29   NR MEN9307744.1 2052160 g12883 i0 85.5 0.993975903614458 55 8 99.4 0 165 1 20 74 MEN9307744.1 hypothetical protein [Fibrobacterota bacterium] diamond 165 108 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31085047 31085047 PRJNA217180_P_NODE_13955_length_164_cov_0.886957_g13855_i0 PRJNA217180 13955 164 0.886957 1.45460948 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 45.4 0.00141   NR MBD3240590.1 2663014 g13855 i0 45.3 0.969512195121951 53 29 97 0 159 1 172 224 MBD3240590.1 IS110 family transposase [Chitinivibrionales bacterium] diamond 159 45.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;