RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA217180" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA217180 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28305676 28305676 PRJNA217180_P_NODE_14906_length_162_cov_0.902655_g14806_i0 PRJNA217180 14906 162 0.902655 1.4623011 Chlamydiota bacterium 2081524 Bacteria Bacteria 110 3.84e-27   NR MES2345577.1 2081524 g14806 i0 94.4 2 54 3 100 0 1 162 164 217 MES2345577.1 peptide chain release factor 2 [Chlamydiota bacterium] diamond 324 110 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29821013 29821013 PRJNA217180_P_NODE_15271_length_161_cov_0.910714_g15171_i0 PRJNA217180 15271 161 0.910714 1.46624954 Chlamydiota bacterium 2081524 Bacteria Bacteria 47.4 2.68e-4   NR MEI6243395.1 2081524 g15171 i0 55.9 0.633540372670807 34 15 63.4 0 51 152 119 152 MEI6243395.1 NUMOD3 domain-containing DNA-binding protein [Chlamydiota bacterium] diamond 102 47.4 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32603215 32603215 PRJNA217180_P_NODE_15420_length_161_cov_0.910714_g15320_i0 PRJNA217180 15420 161 0.910714 1.46624954 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 101 2.96e-23   NR HUD02062.1 2047756 g15320 i0 94.3 0.987577639751553 53 3 98.8 0 3 161 180 232 HUD02062.1 DNA polymerase I [Rhabdochlamydiaceae bacterium] diamond 159 101 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;