RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA217180" and tax_phylum = "Candidatus Parcubacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA217180 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27800666 27800666 PRJNA217180_P_NODE_10844_length_180_cov_1.312977_g10744_i0 PRJNA217180 10844 180 1.312977 2.3633586 Candidatus Parcubacteria bacterium 4484_255 1970769 Bacteria Bacteria 67 3.79e-11   NR OQX71067.1 1970769 g10744 i0 55.2 0.966666666666667 58 26 96.7 0 3 176 272 329 OQX71067.1 MAG: hypothetical protein B6D52_02720 [Candidatus Parcubacteria bacterium 4484_255] diamond 174 67 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium 4484_255
27926810 27926810 PRJNA217180_P_NODE_15505_length_161_cov_0.910714_g15405_i0 PRJNA217180 15505 161 0.910714 1.46624954 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 78.6 7.55e-16   NR MEY4747148.1 2762014 g15405 i0 75.5 0.987577639751553 53 13 98.8 0 161 3 107 159 MEY4747148.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 159 78.6 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29838966 29838966 PRJNA217180_P_NODE_14851_length_162_cov_0.902655_g14751_i0 PRJNA217180 14851 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 46.2 7.12e-4   NR KXJ98783.1 1617425 g14751 i0 49 3.66666666666667 49 25 90.7 0 16 162 1 49 KXJ98783.1 MAG: 26 kDa periplasmic immunogenic protein precursor [Parcubacteria bacterium OLB19] diamond 594 46.6 0.991416309012876 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium OLB19
30358827 30358827 PRJNA217180_P_NODE_14452_length_163_cov_0.894737_g14352_i0 PRJNA217180 14452 163 0.894737 1.45842131 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 59.3 3.11e-9   NR MBC7981956.1 2762014 g14352 i0 75.6 0.754601226993865 41 10 75.5 0 125 3 1 41 MBC7981956.1 GatB/YqeY domain-containing protein [Candidatus Parcubacteria bacterium] diamond 123 59.3 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31559542 31559542 PRJNA217180_P_NODE_15076_length_162_cov_0.902655_g14976_i0 PRJNA217180 15076 162 0.902655 1.4623011 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 105 3.43e-26   NR MEY3232719.1 2762014 g14976 i0 94.2 3.88888888888889 52 3 96.3 0 3 158 132 183 MEY3232719.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 630 105 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;