RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA217180" and tax_phylum = "Candidatus Nomuraibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Nomuraibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA217180 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13809450 13809450 PRJNA217180_P_NODE_11171_length_177_cov_1.351562_g11071_i0 PRJNA217180 11171 177 1.351562 2.39226474 Bacteria 2 Bacteria Bacteria 108 1.36e-25   NR OGJ10144.1 1801803 g11071 i0 96.4 4.74576271186441 56 2 94.9 0 170 3 321 376 OGJ10144.1 MAG: hypothetical protein A2356_01355 [Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_39_16] diamond 840 108 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_39_16
28305678 28305678 PRJNA217180_P_NODE_9906_length_187_cov_1.478261_g9806_i0 PRJNA217180 9906 187 1.478261 2.76434807 Candidatus Nomurabacteria bacterium GW2 2052152 Bacteria Bacteria 73.9 7.43e-15   NR KKS05154.1 1618736 g9806 i0 63.5 0.834224598930481 52 19 83.4 0 177 22 91 142 KKS05154.1 MAG: hypothetical protein UU58_C0001G0014 [Candidatus Nomurabacteria bacterium GW2011_GWA2_41_25] diamond 156 73.9 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium GW2011_GWA2_41_25
28937276 28937276 PRJNA217180_P_NODE_15028_length_162_cov_0.902655_g14928_i0 PRJNA217180 15028 162 0.902655 1.4623011 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 45.4 1.99e-4   NR HAQ03051.1 2052152 g14928 i0 50 0.814814814814815 44 22 81.5 0 161 30 22 65 HAQ03051.1 hypothetical protein [Candidatus Nomurabacteria bacterium] diamond 132 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
31798289 31798289 PRJNA217180_P_NODE_13337_length_165_cov_0.879310_g13237_i0 PRJNA217180 13337 165 0.87931 1.4508615 Bacteria 2 Bacteria Bacteria 55.5 4.03e-7   NR USN97622.1 2052152 g13237 i0 73.5 1.23636363636364 34 9 61.8 0 165 64 209 242 USN97622.1 MAG: type IV secretion system protein [Candidatus Nomurabacteria bacterium] diamond 204 55.5 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;