RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA217180" and tax_kingdom = "Thermotogati"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA217180 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1641864 1641864 PRJNA217180_P_NODE_12082_length_169_cov_1.700000_g11982_i0 PRJNA217180 12082 169 1.7 2.873 Deinococcus gobiensis 502394 Bacteria Bacteria 206 1.02e-48   NTclustered gi|379998737|gb|CP002191.1| 745776 g11982 i0 89.157 6.90532544378698 166 16 98 2 5 169 2361176 2361012 Deinococcus gobiensis I-0, complete genome blastn 1167 206 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
29252661 29252661 PRJNA217180_P_NODE_13609_length_165_cov_0.879310_g13509_i0 PRJNA217180 13609 165 0.87931 1.4508615 Fervidobacterium nodosum 2424 Bacteria Bacteria 57.4 8.59e-8   NR HOJ94959.1 2424 g13509 i0 75 0.654545454545455 36 9 65.5 0 3 110 468 503 HOJ94959.1 hypothetical protein [Fervidobacterium nodosum] diamond 108 57.4 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
30628645 30628645 PRJNA217180_P_NODE_14413_length_163_cov_0.894737_g14313_i0 PRJNA217180 14413 163 0.894737 1.45842131 root 1 Root_unresolved Root_unresolved 53.1 2.64e-6   NR ADR37721.1 670487 g14313 i0 58.7 5.26380368098159 46 19 84.7 0 26 163 141 186 ADR37721.1 thymidylate synthase (FAD) [Oceanithermus profundus DSM 14977] diamond 858 53.1 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Oceanithermus Oceanithermus profundus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;