RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA217180" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermoproteati · 9 ✖

bioproject 1

  • PRJNA217180 · 9 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26852724 26852724 PRJNA217180_P_NODE_15021_length_162_cov_0.902655_g14921_i0 PRJNA217180 15021 162 0.902655 1.4623011 Nitrososphaerota archaeon 2026795 Archaea Archaea 68.9 6.95e-12   NR MBM3896806.1 2026795 g14921 i0 58.5 0.981481481481482 53 22 98.1 0 161 3 332 384 MBM3896806.1 hypothetical protein [Nitrososphaerota archaeon] diamond 159 68.9 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
27344827 27344827 PRJNA217180_P_NODE_15283_length_161_cov_0.910714_g15183_i0 PRJNA217180 15283 161 0.910714 1.46624954 Archaea 2157 Archaea Archaea 50.4 2.28e-5   NR HWY36640.1 2202732 g15183 i0 55.8 1.75155279503106 43 18 78.3 1 6 131 30 72 HWY36640.1 hypothetical protein [Nitrosopumilaceae archaeon] diamond 282 50.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
27484783 27484783 PRJNA217180_P_NODE_12943_length_166_cov_0.871795_g12843_i0 PRJNA217180 12943 166 0.871795 1.4471797 Nitrososphaera sp. 1971748 Archaea Archaea 67 3.49e-11   NR HJS83577.1 1971748 g12843 i0 49.1 0.957831325301205 53 27 95.8 0 164 6 403 455 HJS83577.1 invasin domain 3-containing protein [Nitrososphaera sp.] diamond 159 67 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
27769181 27769181 PRJNA217180_P_NODE_14304_length_163_cov_0.894737_g14204_i0 PRJNA217180 14304 163 0.894737 1.45842131 Thermoproteota archaeon 2056631 Archaea Archaea 47 3.34e-4   NR RDJ35336.1 2056631 g14204 i0 36.4 1.01226993865031 55 34 99.4 1 162 1 42 96 RDJ35336.1 MAG: hypothetical protein DWQ19_11010 [Thermoproteota archaeon] diamond 165 47 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
29063584 29063584 PRJNA217180_P_NODE_13388_length_165_cov_0.879310_g13288_i0 PRJNA217180 13388 165 0.87931 1.4508615 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 47.8 2.11e-4   NR MCJ7638148.1 2169593 g13288 i0 57.1 1.45454545454545 35 15 63.6 0 3 107 177 211 MCJ7638148.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 240 47.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
29333849 29333849 PRJNA217180_P_NODE_15029_length_162_cov_0.902655_g14929_i0 PRJNA217180 15029 162 0.902655 1.4623011 Thermoproteati 1783275 Archaea Archaea 56.6 1.32e-7   NR WP_342788287.1 51678 g14929 i0 51 4.57407407407407 49 24 90.7 0 155 9 211 259 WP_342788287.1 GDP-mannose dehydrogenase [Desulfurococcus sp.] diamond 741 57 0.992982456140351 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Desulfurococcus Desulfurococcus sp.
30453376 30453376 PRJNA217180_P_NODE_13893_length_164_cov_0.886957_g13793_i0 PRJNA217180 13893 164 0.886957 1.45460948 Nitrososphaerota archaeon 2026795 Archaea Archaea 41.6 0.0161   NR MCL4436369.1 2026795 g13793 i0 46.3 2.83536585365854 41 21 73.2 1 35 154 1 41 MCL4436369.1 nickel-responsive transcriptional regulator NikR [Nitrososphaerota archaeon] diamond 465 41.6 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
31685701 31685701 PRJNA217180_P_NODE_9037_length_195_cov_1.109589_g8937_i0 PRJNA217180 9037 195 1.109589 2.16369855 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 43.9 0.00149   NR HSE99736.1 2169593 g8937 i0 77.8 0.415384615384615 27 5 40 1 79 2 1 27 HSE99736.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 81 43.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
32603211 32603211 PRJNA217180_P_NODE_11760_length_172_cov_1.308943_g11660_i0 PRJNA217180 11760 172 1.308943 2.25138196 Nitrososphaerota archaeon 2026795 Archaea Archaea 49.7 2.04e-5   NR MDE1868209.1 2026795 g11660 i0 45.5 0.959302325581395 55 29 95.9 1 170 6 83 136 MDE1868209.1 hypothetical protein [Nitrososphaerota archaeon] diamond 165 49.7 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;