RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA217180", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA217180 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26725383 26725383 PRJNA217180_P_NODE_15581_length_161_cov_0.857143_g15481_i0 PRJNA217180 15581 161 0.857143 1.38000023 Desulfoplanes sp. 3018273 Bacteria Bacteria 44.7 0.0011   NR MDD4648812.1 3018273 g15481 i0 47.4 0.708074534161491 38 20 70.8 0 5 118 77 114 MDD4648812.1 hypothetical protein [Desulfoplanes sp.] diamond 114 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfoplanaceae Desulfoplanes Desulfoplanes sp.
28053018 28053018 PRJNA217180_P_NODE_10545_length_182_cov_1.533835_g10445_i0 PRJNA217180 10545 182 1.533835 2.7915797 Desulfuromonadaceae bacterium 2099677 Bacteria Bacteria 68.9 9.53e-12   NR HEY3308057.1 2099677 g10445 i0 56.1 3.57692307692308 57 25 94 0 171 1 292 348 HEY3308057.1 tetratricopeptide repeat protein [Desulfuromonadaceae bacterium] diamond 651 68.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae   Desulfuromonadaceae bacterium
31748989 31748989 PRJNA217180_P_NODE_6237_length_235_cov_1.037634_g6137_i0 PRJNA217180 6237 235 1.037634 2.4384399 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 79.7 2.38e-15   NR NIQ13497.1 2080303 g6137 i0 50 0.970212765957447 76 38 97 0 233 6 70 145 NIQ13497.1 hypothetical protein [Candidatus Dadabacteria bacterium] diamond 228 79.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium
32128969 32128969 PRJNA217180_P_NODE_14398_length_163_cov_0.894737_g14298_i0 PRJNA217180 14398 163 0.894737 1.45842131 Desulfuromusa kysingii 37625 Bacteria Bacteria 61.6 2.65e-9   NR WP_092347928.1 37625 g14298 i0 63.5 0.957055214723926 52 19 95.7 0 158 3 739 790 WP_092347928.1 NosD domain-containing protein [Desulfuromusa kysingii] diamond 156 61.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Desulfuromusa Desulfuromusa kysingii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;