RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA217180" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA217180 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16944396 16944396 PRJNA217180_P_NODE_5114_length_256_cov_2.318841_g5014_i0 PRJNA217180 5114 256 2.318841 5.93623296 Cetobacterium somerae 188913 Bacteria Bacteria 462 9.07e-126   NTclustered gi|2201062197|gb|CP092519.1| 188913 g5014 i0 99.219 460.6796875 256 2 100 0 1 256 48886 49141 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 117934 462 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
18907504 18907504 PRJNA217180_P_NODE_14795_length_162_cov_0.902655_g14695_i0 PRJNA217180 14795 162 0.902655 1.4623011 Cetobacterium 180162 Bacteria Bacteria 300 4.36e-77   NTclustered gi|2865368125|gb|CP122294.1| 188913 g14695 i0 100 59.5925925925926 162 0 100 0 1 162 279348 279509 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 9654 300 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
29694630 29694630 PRJNA217180_P_NODE_14290_length_163_cov_1.184211_g14190_i0 PRJNA217180 14290 163 1.184211 1.93026393 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 87.4 2.25e-18   NR MBP6407237.1 2053555 g14190 i0 77.4 0.975460122699387 53 12 97.5 0 4 162 53 105 MBP6407237.1 hybrid sensor histidine kinase/response regulator [Fusobacteriaceae bacterium] diamond 159 87.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;