RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA217180", tax_kingdom = "Fungi" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21457794 21457794 PRJNA217180_P_NODE_7877_length_211_cov_0.864198_g7777_i0 PRJNA217180 7877 211 0.864198 1.82345778 Agaricomycetes 155619 Fungi Fungi 363 7.539999999999999e-96   NTclustered gi|50295444|gb|AY654888.1| 139114 g7777 i0 97.642 100.298578199052 212 3 100 2 1 211 892 1102 Fibricium rude isolate AFTOL-ID 464 18S ribosomal RNA gene, partial sequence blastn 21163 363 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Corticiales Corticiaceae Fibricium Fibricium rude
22732814 22732814 PRJNA217180_P_NODE_11038_length_178_cov_1.542636_g10938_i0 PRJNA217180 11038 178 1.542636 2.74589208 Eukaryota 2759 Fungi Fungi 318 1.34e-82   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g10938 i0 98.883 93.1573033707865 179 1 100 1 1 178 1511 1689 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 16582 318 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;