RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA217180", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA217180 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30136777 30136777 PRJNA217180_P_NODE_11632_length_173_cov_1.451613_g11532_i0 PRJNA217180 11632 173 1.451613 2.51129049 Mesomycoplasma ovipneumoniae 29562 Bacteria Bacteria 79 1.29e-16   NR WP_341433655.1 29562 g11532 i0 66.1 2.91329479768786 56 19 97.1 0 6 173 67 122 WP_341433655.1 XkdF-like putative serine protease domain-containing protein, partial [Mesomycoplasma ovipneumoniae] diamond 504 79 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma ovipneumoniae
32697525 32697525 PRJNA217180_P_NODE_8460_length_203_cov_0.954545_g8360_i0 PRJNA217180 8460 203 0.954545 1.93772635 Mycoplasmopsis arginini 2094 Bacteria Bacteria 134 2.69e-38   NR WP_282460070.1 2094 g8360 i0 89.6 0.990147783251232 67 7 99 0 201 1 82 148 WP_282460070.1 DUF2800 domain-containing protein, partial [Mycoplasmopsis arginini] diamond 201 134 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
32760601 32760601 PRJNA217180_P_NODE_14200_length_163_cov_1.859649_g14100_i0 PRJNA217180 14200 163 1.859649 3.03122787 Mycoplasmopsis arginini 2094 Bacteria Bacteria 99.4 8.62e-25   NR WP_282460024.1 2094 g14100 i0 87 0.993865030674847 54 7 99.4 0 1 162 62 115 WP_282460024.1 hypothetical protein, partial [Mycoplasmopsis arginini] diamond 162 99.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;