RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA217180", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31337844 31337844 PRJNA217180_P_NODE_11056_length_178_cov_1.279070_g10956_i0 PRJNA217180 11056 178 1.27907 2.2767446 Gonapodya prolifera JEL478 1344416 Fungi Fungi 70.5 1.48e-12   NR KXS13347.1 1344416 g10956 i0 60.4 6.62359550561798 48 19 80.9 0 146 3 183 230 KXS13347.1 aquaporin-like protein [Gonapodya prolifera JEL478] diamond 1179 70.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya prolifera
32413640 32413640 PRJNA217180_P_NODE_13939_length_164_cov_0.886957_g13839_i0 PRJNA217180 13939 164 0.886957 1.45460948 Kappamyces sp. JEL 2040833 Fungi Fungi 58.2 4.56e-8   NR KAJ3300922.1 2724216 g13839 i0 46.3 0.98780487804878 54 26 93.3 1 164 12 306 359 KAJ3300922.1 cyclin-dependent kinase inhibitor far1 [Kappamyces sp. JEL0829] diamond 162 58.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Kappamycetaceae Kappamyces Kappamyces sp. JEL0829

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;