RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA217180" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1056081 1056081 PRJNA217180_P_NODE_12601_length_167_cov_0.864407_g12501_i0 PRJNA217180 12601 167 0.864407 1.44355969 Trypanosoma 5690 Euglenozoa other_Eukaryota 309 7.53e-80   NTclustered gi|62359576|gb|AC159703.1| 5691 g12501 i0 100 4 167 0 100 0 1 167 134868 135034 Trypanosoma brucei isolate GUTat10.1 chromosome 8 clone RPCI93-30K1, complete sequence blastn 668 309 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
6158761 6158761 PRJNA217180_P_NODE_11325_length_175_cov_2.507937_g11225_i0 PRJNA217180 11325 175 2.507937 4.38888975 Trypanosoma 5690 Euglenozoa other_Eukaryota 324 2.83e-84   NTclustered gi|62359576|gb|AC159703.1| 5691 g11225 i0 100 5 175 0 100 0 1 175 137231 137057 Trypanosoma brucei isolate GUTat10.1 chromosome 8 clone RPCI93-30K1, complete sequence blastn 875 324 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;