RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA217180", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA217180 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28368753 28368753 PRJNA217180_P_NODE_13386_length_165_cov_0.879310_g13286_i0 PRJNA217180 13386 165 0.87931 1.4508615 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 43.1 0.00947   NR MDD5376738.1 2044595 g13286 i0 46.3 0.981818181818182 54 20 98.2 1 164 3 586 630 MDD5376738.1 type II secretion system protein [Candidatus Altimarinota bacterium] diamond 162 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29680813 29680813 PRJNA217180_P_NODE_14470_length_163_cov_0.894737_g14370_i0 PRJNA217180 14470 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 81.6 8.88e-17   NR MCF7843855.1 2044595 g14370 i0 74.1 1.98773006134969 54 14 99.4 0 162 1 9 62 MCF7843855.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 324 81.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;