RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA217180" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA217180 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9295159 9295159 PRJNA217180_P_NODE_11588_length_173_cov_2.024194_g11488_i0 PRJNA217180 11588 173 2.024194 3.50185562 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.015   NTclustered gi|66818710|ref|XM_637923.1| 352472 g11488 i0 100 0.161849710982659 28 0 16 0 2 29 1174 1147 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0276709) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
13120888 13120888 PRJNA217180_P_NODE_12411_length_167_cov_0.864407_g12311_i0 PRJNA217180 12411 167 0.864407 1.44355969 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.014   NTclustered gi|66812097|ref|XM_635136.1| 352472 g12311 i0 100 0.167664670658683 28 0 17 0 106 133 348 321 Dictyostelium discoideum AX4 hypothetical protein (vilD) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22043675 22043675 PRJNA217180_P_NODE_3278_length_314_cov_1.501887_g3178_i0 PRJNA217180 3278 314 1.501887 4.71592518 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.029   NTclustered gi|66816568|ref|XM_637202.1| 352472 g3178 i0 100 0.089171974522293 28 0 9 0 41 68 246 273 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0278329) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;