RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA207719" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA207719 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2917689 2917689 PRJNA207719_P_NODE_1263_length_158_cov_2.945736_g1243_i0 PRJNA207719 1263 158 2.945736 4.65426288 Streptococcus oralis 1303 Bacteria Bacteria 274 2.56e-69   NTclustered gi|288522|emb|X68427.1| 1303 g1243 i0 98.089 371.481012658228 157 3 99 0 1 157 1233 1389 S.oralis gene for 23S rRNA blastn 58694 274 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus oralis
6744705 6744705 PRJNA207719_P_NODE_866_length_208_cov_1.508380_g846_i0 PRJNA207719 866 208 1.50838 3.1374304 Candidatus Syntrophocurvum alkaliphilum 2293317 Bacteria Bacteria 54.7 0.005   NTclustered gi|1782150439|gb|CP046457.1| 2293317 g846 i0 100 0.139423076923077 29 0 14 0 156 184 1433593 1433565 Candidatus Syntrophocurvum alkaliphilum isolate B(2M) chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae Candidatus Syntrophocurvum Candidatus Syntrophocurvum alkaliphilum
8708727 8708727 PRJNA207719_P_NODE_907_length_201_cov_2.168605_g887_i0 PRJNA207719 907 201 2.168605 4.35889605 Staphylococcus 1279 Bacteria Bacteria 364 1.98e-96   NTclustered gi|2851146212|gb|CP085027.1| 1283 g887 i0 99.5 472.398009950249 200 1 99 0 2 201 730484 730285 Staphylococcus haemolyticus strain SLM-175 chromosome, complete genome blastn 94952 364 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus
9984129 9984129 PRJNA207719_P_NODE_728_length_233_cov_2.553922_g708_i0 PRJNA207719 728 233 2.553922 5.95063826 Staphylococcus 1279 Bacteria Bacteria 431 2.2899999999999996e-116   NTclustered gi|2692800537|gb|CP146065.1| 1283 g708 i0 100 474.351931330472 233 0 100 0 1 233 772625 772393 Staphylococcus haemolyticus strain SPS12 chromosome, complete genome blastn 110524 431 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;