RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA207719" and tax_clade = "Sar"

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analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA207719 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4194152 4194152 PRJNA207719_P_NODE_664_length_245_cov_1.731481_g644_i0 PRJNA207719 664 245 1.731481 4.24212845 Vitrella brassicaformis CCMP3155 1169540 SAR_Eukaryotes SAR_Eukaryotes 140 1.7599999999999998e-37   NR CEM14916.1 1169540 g644 i0 80.7 7.06530612244898 83 14 99.2 1 243 1 132 214 CEM14916.1 unnamed protein product [Vitrella brassicaformis CCMP3155] diamond 1731 140 1 Eukaryota Sar         Vitrellaceae Vitrella Vitrella brassicaformis
10571133 10571133 PRJNA207719_P_NODE_389_length_337_cov_2.775974_g369_i0 PRJNA207719 389 337 2.775974 9.35503238 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 233 1.06e-56   NTclustered gi|698800189|ref|XM_009834822.1| 112090 g369 i0 80.808 89.053412462908 297 57 88 0 41 337 563 267 Aphanomyces astaci elongation factor 1-alpha mRNA blastn 30011 233 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
19493032 19493032 PRJNA207719_P_NODE_816_length_216_cov_3.989305_g796_i0 PRJNA207719 816 216 3.989305 8.6168988 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 73.6 3.3e-14   NR KAI2508236.1 210448 g796 i0 51.5 0.916666666666667 66 32 91.7 0 214 17 63 128 KAI2508236.1 dienelactone hydrolase [Fragilaria crotonensis] diamond 198 73.6 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
31179492 31179492 PRJNA207719_P_NODE_435_length_315_cov_3.374126_g415_i0 PRJNA207719 435 315 3.374126 10.6284969 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 52.8 2.54e-5   NR ETO19249.1 46433 g415 i0 29.3 1.73333333333333 99 64 89.5 3 33 314 124 221 ETO19249.1 hypothetical protein RFI_17981, partial [Reticulomyxa filosa] diamond 546 52.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;