RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA207343" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA207343 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15083519 15083519 PRJNA207343_S_NODE_6692_length_237_cov_6.135000_g6155_i0 PRJNA207343 6692 237 6.135 14.53995 root 1 Root_unresolved Root_unresolved 154 5.67e-33   NTclustered gi|1870342607|gb|MT263507.1| 9031 g6155 i0 100 35.0210970464135 83 0 35 0 145 227 4126 4044 Gallus gallus endogenous virus Avian leukosis virus subgroup E (ALVE) clone ALVEB5 genomic sequence blastn 8300 154 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
19492979 19492979 PRJNA207343_S_NODE_8436_length_193_cov_1.250000_g7899_i0 PRJNA207343 8436 193 1.25 2.4125 Mus musculus 10090 Chordata Chordata 340 3.17e-89   NTclustered gi|73695538|gb|AC137677.24| 10090 g7899 i0 98.446 260.829015544041 193 3 100 0 1 193 55807 55999 Mus musculus chromosome 1, clone RP23-257D12, complete sequence blastn 50340 340 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21457735 21457735 PRJNA207343_S_NODE_7977_length_203_cov_1.174699_g7440_i0 PRJNA207343 7977 203 1.174699 2.38463897 Mus 10088 Chordata Chordata 375 9.24e-100   NTclustered gi|846388176|dbj|LC062059.1| 10090 g7440 i0 100 100 203 0 100 0 1 203 1348 1550 Mus musculus mitochondrion DNA, including Cytb, tRNA-Tyr, tRNA-Pro, tRNA-Phe, 12S rRNA genes and D-loop, complete sequence, sequence_id: (14446..634)_12 blastn 20300 375 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;