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contig_metadata

10 rows where bioproject = "PRJNA207343" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA207343 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1641760 1641760 PRJNA207343_S_NODE_7002_length_227_cov_6.515789_g6465_i0 PRJNA207343 7002 227 6.515789 14.79084103 Leucosporidium scottii 5278 Fungi Fungi 409 1.04e-109   NTclustered gi|1358186634|gb|MH047191.1| 5278 g6465 i0 99.119 98.1409691629956 227 2 100 0 1 227 4022 3796 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 22278 409 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
1641845 1641845 PRJNA207343_S_NODE_9682_length_172_cov_4.140741_g9145_i0 PRJNA207343 9682 172 4.140741 7.12207452 Sporobolomyces roseus 40563 Fungi Fungi 279 6.08e-71   NTclustered gi|111283897|gb|DQ832234.1| 40563 g9145 i0 100 94.7151162790698 151 0 88 0 22 172 1402 1252 Sporobolomyces roseus AFTOL-ID 1549 25S large subunit ribosomal RNA gene, partial sequence blastn 16291 279 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces roseus
5470401 5470401 PRJNA207343_S_NODE_9165_length_180_cov_3.349650_g8628_i0 PRJNA207343 9165 180 3.34965 6.02937 Rhodotorula glutinis 5535 Fungi Fungi 180 6.71e-41   NTclustered gi|225134685|gb|FJ345357.1| 5535 g8628 i0 87.261 8.07222222222222 157 20 87 0 12 168 2774 2618 Rhodotorula glutinis strain ATCC 16726 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1453 180 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula glutinis
11259184 11259184 PRJNA207343_S_NODE_6869_length_232_cov_1.671795_g6332_i0 PRJNA207343 6869 232 1.671795 3.8785644 Sporobolomyces 5429 Fungi Fungi 429 8.2e-116   NTclustered gi|189418985|gb|EU723502.1| 5002 g6332 i0 100 100 232 0 100 0 1 232 17 248 Sporidiobolus johnsonii isolate NIOCC Y4 18S ribosomal RNA gene, partial sequence blastn 23200 429 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces johnsonii
17633606 17633606 PRJNA207343_S_NODE_8034_length_201_cov_5.012195_g7497_i0 PRJNA207343 8034 201 5.012195 10.07451195 Fungi 4751 Fungi Fungi 296 7.31e-76   NTclustered gi|61397691|gb|AY818988.1| 91647 g7497 i0 93.532 99.9950248756219 201 9 100 4 1 201 1105 909 Tilletia iowensis voucher BPI 28S ribosomal RNA gene, partial sequence blastn 20099 296 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Tilletiales Tilletiaceae Tilletia Tilletia iowensis
17633610 17633610 PRJNA207343_S_NODE_8174_length_198_cov_6.577640_g7637_i0 PRJNA207343 8174 198 6.57764 13.0237272 Basidiomycota 5204 Fungi Fungi 357 3.25e-94   NTclustered gi|8096249|dbj|AB021694.1| 5003 g7637 i0 100 97.2777777777778 193 0 97 0 1 193 1417 1609 Sporidiobolus pararoseus gene for 18S ribosomal RNA, partial sequence blastn 19261 357 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces pararoseus
18218680 18218680 PRJNA207343_S_NODE_8235_length_197_cov_2.725000_g7698_i0 PRJNA207343 8235 197 2.725 5.36825 Rhodotorula glutinis 5535 Fungi Fungi 344 2.51e-90   NTclustered gi|1394846613|gb|MH427374.1| 5535 g7698 i0 98.958 101.89847715736 192 2 97 0 1 192 197 388 Rhodotorula glutinis strain SY01 large subunit ribosomal RNA gene, partial sequence blastn 20074 344 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula glutinis
21457701 21457701 PRJNA207343_S_NODE_6117_length_257_cov_9.159091_g5580_i0 PRJNA207343 6117 257 9.159091 23.53886387 Basidiomycota 5204 Fungi Fungi 472 1.51e-128   NTclustered gi|1240939304|gb|MF927664.1| 40563 g5580 i0 100 99.2217898832685 255 0 99 0 1 255 429 175 Sporobolomyces roseus strain KBP:Y-5432 internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 25500 472 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces roseus
22043557 22043557 PRJNA207343_S_NODE_7078_length_225_cov_2.404255_g6541_i0 PRJNA207343 7078 225 2.404255 5.40957375 Leucosporidium scottii 5278 Fungi Fungi 348 2.28e-91   NTclustered gi|1358186634|gb|MH047191.1| 5278 g6541 i0 96.226 102.635555555556 212 8 94 0 14 225 4210 3999 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23093 348 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
22732765 22732765 PRJNA207343_S_NODE_7938_length_203_cov_7.228916_g7401_i0 PRJNA207343 7938 203 7.228916 14.67469948 Basidiomycota 5204 Fungi Fungi 342 9.369999999999999e-90   NTclustered gi|92111142|gb|DQ459616.1| 5003 g7401 i0 98.953 94.0886699507389 191 2 94 0 5 195 268 78 Sporidiobolus pararoseus isolate C44 18S small subunit ribosomal RNA gene, partial sequence blastn 19100 342 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces pararoseus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;