RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA207343", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA207343 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2917509 2917509 PRJNA207343_S_NODE_3443_length_440_cov_2.091811_g2911_i0 PRJNA207343 3443 440 2.091811 9.2039684 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 532 1.25e-146   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g2911 i0 89.302 66.1568181818182 430 38 97 8 1 425 1892 2318 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 29109 532 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
8708532 8708532 PRJNA207343_S_NODE_11407_length_152_cov_2.191304_g10870_i0 PRJNA207343 11407 152 2.191304 3.33078208 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 211 1.94e-50   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g10870 i0 96.154 5.69078947368421 130 3 85 2 18 146 203 331 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 865 211 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
15083580 15083580 PRJNA207343_S_NODE_9012_length_183_cov_1.164384_g8475_i0 PRJNA207343 9012 183 1.164384 2.13082272 Oligohymenophorea 6020 SAR_Eukaryotes SAR_Eukaryotes 63.9 7.2e-6   NTclustered gi|404425900|gb|JX310029.1| 692531 g8475 i0 95.122 19.0655737704918 41 1 22 1 1 40 1943 1903 Sathrophilus holtae voucher FXP2007102402 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3489 63.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Cinetochilidae Sathrophilus Sathrophilus holtae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;