RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA207343", tax_clade = "Opisthokonta" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA207343 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
366841 366841 PRJNA207343_S_NODE_3261_length_462_cov_247.294118_g2729_i0 PRJNA207343 3261 462 247.294118 1142.49882516 uncultured Verrucisporota 1193708 Fungi Fungi 75 9.57e-9   NTclustered gi|453201931|gb|JQ999839.1| 1193708 g2729 i0 100 8.26190476190476 40 0 9 0 423 462 148 109 Uncultured Verrucisporota clone GKJWQY101BHR5R 28S ribosomal RNA gene, partial sequence blastn 3817 75 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Mycosphaerellaceae   uncultured Verrucisporota
3606297 3606297 PRJNA207343_S_NODE_10903_length_157_cov_3.075000_g10366_i0 PRJNA207343 10903 157 3.075 4.82775 root 1 Root_unresolved Root_unresolved 259 7.11e-65   NTclustered gi|283827952|gb|EU019262.2| 29917 g10366 i0 100 89.171974522293 140 0 89 0 8 147 2549 2410 Cladosporium cladosporioides strain CBS 109.21 28S large subunit ribosomal RNA gene, partial sequence blastn 14000 259 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;