RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA206070" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA206070 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26725375 26725375 PRJNA206070_S_NODE_6341_length_582_cov_7.730275_g4504_i0 PRJNA206070 6341 582 7.730275 44.9902005 Fibrobacter sp. 35828 Bacteria Bacteria 153 1.38e-40   NR MCF0225529.1 35828 g4504 i0 62.5 0.618556701030928 120 44 61.9 1 362 3 207 325 MCF0225529.1 hypothetical protein [Fibrobacter sp.] diamond 360 153 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
27217919 27217919 PRJNA206070_S_NODE_31142_length_151_cov_1.982456_g29266_i0 PRJNA206070 31142 151 1.982456 2.99350856 Fibrobacter 832 Bacteria Bacteria 55.8 2.42e-7   NR WP_073304425.1 28122 g29266 i0 56 2.98013245033113 50 20 97.4 2 2 148 143 191 WP_073304425.1 hypothetical protein [Fibrobacter intestinalis] diamond 450 55.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter intestinalis
27484779 27484779 PRJNA206070_S_NODE_9003_length_418_cov_3.905512_g7130_i0 PRJNA206070 9003 418 3.905512 16.32504016 Fibrobacter sp. 35828 Bacteria Bacteria 135 1.37e-34   NR MCF0225529.1 35828 g7130 i0 50.4 0.997607655502392 139 69 99.8 0 2 418 7 145 MCF0225529.1 hypothetical protein [Fibrobacter sp.] diamond 417 135 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
28337288 28337288 PRJNA206070_S_NODE_5786_length_638_cov_3.131448_g3969_i0 PRJNA206070 5786 638 3.131448 19.97863824 uncultured Fibrobacter sp. 261512 Bacteria Bacteria 51.6 9.71e-4   NR WP_295001965.1 261512 g3969 i0 29.9 0.785266457680251 167 90 72.4 7 88 549 229 381 WP_295001965.1 ATP-binding domain-containing protein [uncultured Fibrobacter sp.] diamond 501 51.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.
30484775 30484775 PRJNA206070_S_NODE_5313_length_698_cov_3.239032_g3526_i0 PRJNA206070 5313 698 3.239032 22.60844336 Fibrobacter sp. 35828 Bacteria Bacteria 278 1.62e-88   NR MBR6450493.1 35828 g3526 i0 60.3 2.99140401146132 232 91 99.3 1 4 696 55 286 MBR6450493.1 hypothetical protein [Fibrobacter sp.] diamond 2088 278 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
30642526 30642526 PRJNA206070_S_NODE_2873_length_1648_cov_4.723774_g1521_i0 PRJNA206070 2873 1648 4.723774 77.84779552 uncultured Fibrobacter sp. 261512 Bacteria Bacteria 187 3.0299999999999996e-47   NR WP_295001966.1 261512 g1521 i0 29.6 0.762742718446602 419 274 74.5 12 1234 8 140 547 WP_295001966.1 DUF5906 domain-containing protein [uncultured Fibrobacter sp.] diamond 1257 187 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.
31843875 31843875 PRJNA206070_S_NODE_8117_length_459_cov_5.611374_g6246_i0 PRJNA206070 8117 459 5.611374 25.75620666 Fibrobacter sp. 35828 Bacteria Bacteria 75.5 4.59e-13   NR NLB64271.1 35828 g6246 i0 40.7 1.37908496732026 108 61 68.6 1 95 409 155 262 NLB64271.1 sigma-70 family RNA polymerase sigma factor [Fibrobacter sp.] diamond 633 75.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
32746837 32746837 PRJNA206070_S_NODE_6880_length_537_cov_22.614000_g5024_i0 PRJNA206070 6880 537 22.614 121.43718 root 1 Root_unresolved Root_unresolved 151 9.679999999999997e-43   NR WP_288800649.1 261512 g5024 i0 54.3 3.10055865921788 138 61 77.1 2 94 507 55 190 WP_288800649.1 hypothetical protein [uncultured Fibrobacter sp.] diamond 1665 151 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;