RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA206070", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA206070 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23318475 23318475 PRJNA206070_S_NODE_23439_length_182_cov_1.075862_g21563_i0 PRJNA206070 23439 182 1.075862 1.95806884 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 95.1 1.51e-21   NR HEU5041468.1 2448054 g21563 i0 80 3.95604395604396 60 12 98.9 0 181 2 126 185 HEU5041468.1 helix-turn-helix domain-containing protein [Gemmatimonadales bacterium] diamond 720 95.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28273969 28273969 PRJNA206070_S_NODE_14146_length_280_cov_1.444444_g12270_i0 PRJNA206070 14146 280 1.444444 4.0444432 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 50.8 8.41e-5   NR HEX6924484.1 3047548 g12270 i0 51 0.546428571428571 51 15 54.6 2 156 4 1 41 HEX6924484.1 SMC family ATPase [Longimicrobiaceae bacterium] diamond 153 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
30516271 30516271 PRJNA206070_S_NODE_11513_length_336_cov_4.311037_g9637_i0 PRJNA206070 11513 336 4.311037 14.48508432 Longimicrobiales bacterium 2910168 Bacteria Bacteria 43.9 0.0408   NR HEU5211059.1 2910168 g9637 i0 35.4 1.24107142857143 65 33 57.1 4 71 262 395 451 HEU5211059.1 sodium:solute symporter family protein [Longimicrobiales bacterium] diamond 417 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;