RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA195897", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA195897 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11844533 11844533 PRJNA195897_P_NODE_3110_length_278_cov_2.768559_g3077_i0 PRJNA195897 3110 278 2.768559 7.69659402 Candidatus Caldarchaeum subterraneum 311458 Archaea Archaea 56.5 0.002   NTclustered gi|315425078|dbj|AP011708.1| 311458 g3077 i0 100 0.41726618705036 30 0 11 0 6 35 41457 41486 Candidatus Caldiarchaeum subterraneum DNA, fosmid clone: JFF022_F09 blastn 116 56.5 1 Archaea   Thermoproteati Nitrososphaerota   Candidatus Caldarchaeales Candidatus Caldarchaeaceae Candidatus Caldarchaeum Candidatus Caldarchaeum subterraneum
29820989 29820989 PRJNA195897_P_NODE_6811_length_190_cov_1.106383_g6778_i0 PRJNA195897 6811 190 1.106383 2.1021277 Nitrosopumilus sp. 2024843 Archaea Archaea 62 2.96e-9   NR MBA4717734.1 2024843 g6778 i0 65.2 1.46842105263158 46 16 72.6 0 186 49 34 79 MBA4717734.1 SBBP repeat-containing protein [Nitrosopumilus sp.] diamond 279 62 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
30800528 30800528 PRJNA195897_P_NODE_5434_length_208_cov_1.100629_g5401_i0 PRJNA195897 5434 208 1.100629 2.28930832 Nitrososphaerales archaeon 2268197 Archaea Archaea 65.9 1.65e-10   NR HVB11633.1 2268197 g5401 i0 50.7 3.85096153846154 67 26 96.6 1 8 208 79 138 HVB11633.1 IMP dehydrogenase [Nitrososphaerales archaeon] diamond 801 65.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;