RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA195897" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA195897 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29189900 29189900 PRJNA195897_P_NODE_5789_length_203_cov_0.915584_g5756_i0 PRJNA195897 5789 203 0.915584 1.85863552 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 52 5.14e-6   NR HEX2869324.1 2049428 g5756 i0 64.3 2.57142857142857 42 13 62.1 1 196 71 137 176 HEX2869324.1 NADP-dependent oxidoreductase [Ignavibacteriales bacterium] diamond 522 52 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
30105440 30105440 PRJNA195897_P_NODE_5652_length_204_cov_1.677419_g5619_i0 PRJNA195897 5652 204 1.677419 3.42193476 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 44.3 0.00606   NR HKI79936.1 2651163 g5619 i0 53.7 0.602941176470588 41 16 55.9 2 4 117 215 255 HKI79936.1 DUF547 domain-containing protein [Ignavibacteriaceae bacterium] diamond 123 44.3 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;