RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA195897", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA195897 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4193028 4193028 PRJNA195897_P_NODE_10424_length_166_cov_0.888889_g10391_i0 PRJNA195897 10424 166 0.888889 1.47555574 Spirochaetaceae bacterium 1898206 Bacteria Bacteria 102 2.77e-24   NR MCX7774936.1 1898206 g10391 i0 92.6 2.92771084337349 54 4 97.6 0 3 164 275 328 MCX7774936.1 type I glyceraldehyde-3-phosphate dehydrogenase [Spirochaetaceae bacterium] diamond 486 102 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium
26820941 26820941 PRJNA195897_P_NODE_11481_length_164_cov_0.904348_g11448_i0 PRJNA195897 11481 164 0.904348 1.48313072 Spirochaetales bacterium 2026792 Bacteria Bacteria 43.5 0.00522   NR MCK5672650.1 2026792 g11448 i0 38.5 0.951219512195122 52 32 95.1 0 1 156 2 53 MCK5672650.1 CDP-alcohol phosphatidyltransferase family protein [Spirochaetales bacterium] diamond 156 43.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium
28905324 28905324 PRJNA195897_P_NODE_6908_length_189_cov_1.114286_g6875_i0 PRJNA195897 6908 189 1.114286 2.10600054 Treponema sp. 166 Bacteria Bacteria 54.7 1.07e-6   NR WP_296853645.1 166 g6875 i0 50 0.793650793650794 50 25 79.4 0 158 9 218 267 WP_296853645.1 ankyrin repeat domain-containing protein [Treponema sp.] diamond 150 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
29442070 29442070 PRJNA195897_P_NODE_6830_length_190_cov_1.106383_g6797_i0 PRJNA195897 6830 190 1.106383 2.1021277 Treponema sp. 166 Bacteria Bacteria 68.6 1.39e-11   NR MBQ2081524.1 166 g6797 i0 51.6 7.15263157894737 62 24 97.9 1 3 188 195 250 MBQ2081524.1 asparagine synthase B [Treponema sp.] diamond 1359 68.6 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;