RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA195897", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA195897 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27958368 27958368 PRJNA195897_P_NODE_6905_length_189_cov_1.114286_g6872_i0 PRJNA195897 6905 189 1.114286 2.10600054 Armatimonadota bacterium 2033014 Bacteria Bacteria 43.1 0.0141   NR MFM7188304.1 2033014 g6872 i0 37.3 0.936507936507937 59 37 93.7 0 1 177 1107 1165 MFM7188304.1 alpha-2-macroglobulin family protein [Armatimonadota bacterium] diamond 177 43.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29473632 29473632 PRJNA195897_P_NODE_9290_length_169_cov_0.866667_g9257_i0 PRJNA195897 9290 169 0.866667 1.46466723 Chthonomonas calidirosea 454171 Bacteria Bacteria 61.6 2.54e-9   NR WP_075165487.1 454171 g9257 i0 54.4 2.02366863905325 57 25 99.4 1 169 2 95 151 WP_075165487.1 NADP-dependent oxidoreductase [Chthonomonas calidirosea] diamond 342 61.6 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;